Serialized Form

Package org.biojava.nbio.ws.alignment

Package org.biojava.nbio.ws.alignment.qblast

Class org.biojava.nbio.ws.alignment.qblast.NCBIQBlastAlignmentProperties

class NCBIQBlastAlignmentProperties extends Object implements Serializable

serialVersionUID:

7158270364392309841L

Serialized Fields

param

Map<BlastAlignmentParameterEnum,String> param

Class org.biojava.nbio.ws.alignment.qblast.NCBIQBlastOutputProperties

class NCBIQBlastOutputProperties extends Object implements Serializable

serialVersionUID:

-9202060390925345163L

Serialized Fields

param

Map<BlastOutputParameterEnum,String> param

Package org.biojava.nbio.ws.hmmer

Class org.biojava.nbio.ws.hmmer.HmmerDomain

class HmmerDomain extends Object implements Serializable

serialVersionUID:

8004302800150892757L

Serialized Fields

aliLenth

Integer aliLenth

evalue

Float evalue

hmmAcc

String hmmAcc

hmmDesc

String hmmDesc

hmmFrom

Integer hmmFrom

hmmName

String hmmName

hmmTo

Integer hmmTo

simCount

Integer simCount

sqFrom

Integer sqFrom

sqTo

Integer sqTo

Class org.biojava.nbio.ws.hmmer.HmmerResult

class HmmerResult extends Object implements Serializable

serialVersionUID:

-6016026193090737943L

Serialized Fields

acc

String acc

dcl

Integer dcl

desc

String desc

domains

SortedSet<HmmerDomain> domains

evalue

Float evalue

name

String name

ndom

Integer ndom

nreported

Integer nreported

pvalue

Double pvalue

score

Float score