Uses of Class
org.biojava.nbio.sequencing.io.fastq.FastqVariant

Uses of FastqVariant in org.biojava.nbio.sequencing.io.fastq

Fields in org.biojava.nbio.sequencing.io.fastq declared as FastqVariant

Modifier and Type	Field and Description
static FastqVariant	FastqBuilder.DEFAULT_VARIANT Default FASTQ sequence format variant, FastqVariant.FASTQ_SANGER.

Methods in org.biojava.nbio.sequencing.io.fastq that return FastqVariant

Modifier and Type	Method and Description
protected FastqVariant	SangerFastqReader.getVariant()
protected FastqVariant	SolexaFastqReader.getVariant()
protected FastqVariant	IlluminaFastqReader.getVariant()
FastqVariant	Fastq.getVariant() Return the FASTQ sequence format variant for this FASTQ formatted sequence.
static FastqVariant	FastqVariant.parseFastqVariant(String name) Return the FASTQ sequence format variant with the specified name, if any.
static FastqVariant	FastqVariant.valueOf(String name) Returns the enum constant of this type with the specified name.
static FastqVariant[]	FastqVariant.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.sequencing.io.fastq with parameters of type FastqVariant

Modifier and Type	Method and Description
FastqBuilder	FastqBuilder.withVariant(FastqVariant variant) Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant.