Package org.biojava.nbio.structure.align.multiple.mc

Class Summary

Class	Description
MultipleMcMain	Main class of the Java implementation of the Combinatorial Extension - Monte Carlo (CEMC) Algorithm, as it was originally described by C.Guda, E.D.Scheeff, P.E.
MultipleMcOptimizer	This class takes a MultipleAlignment seed previously generated and runs a Monte Carlo optimization in order to improve the overall score and highlight common structural motifs.
MultipleMcParameters	Contains the parameters to be sent to the MC optimization.