| demo |
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| org.biojava.nbio.structure |
Interfaces and classes for protein structure (PDB).
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| org.biojava.nbio.structure.align |
Classes for the alignment of structures.
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| org.biojava.nbio.structure.align.ce |
Classes related to the implementation of the CE alignment algorithm, here called jCE.
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| org.biojava.nbio.structure.align.client |
This package deals with the server communication for auto-downloading pre-calculated alignments.
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| org.biojava.nbio.structure.align.events |
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| org.biojava.nbio.structure.align.fatcat |
Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
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| org.biojava.nbio.structure.align.fatcat.calc |
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| org.biojava.nbio.structure.align.helper |
Helper classes for structural alignment.
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| org.biojava.nbio.structure.align.model |
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| org.biojava.nbio.structure.align.multiple |
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| org.biojava.nbio.structure.align.multiple.mc |
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| org.biojava.nbio.structure.align.multiple.util |
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| org.biojava.nbio.structure.align.pairwise |
Classes for the pairwise alignment of structures.
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| org.biojava.nbio.structure.align.seq |
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| org.biojava.nbio.structure.align.util |
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| org.biojava.nbio.structure.align.xml |
Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
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| org.biojava.nbio.structure.asa |
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| org.biojava.nbio.structure.cath |
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| org.biojava.nbio.structure.contact |
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| org.biojava.nbio.structure.domain |
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| org.biojava.nbio.structure.domain.pdp |
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| org.biojava.nbio.structure.ecod |
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| org.biojava.nbio.structure.io |
Input and Output of Structures
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| org.biojava.nbio.structure.io.mmcif |
Input and Output of mmcif files.
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| org.biojava.nbio.structure.io.mmcif.chem |
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| org.biojava.nbio.structure.io.mmcif.model |
Datamodel objects used for processing mmcif files.
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| org.biojava.nbio.structure.io.mmtf |
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| org.biojava.nbio.structure.io.sifts |
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| org.biojava.nbio.structure.io.util |
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| org.biojava.nbio.structure.jama |
Matrix package for from JAMA |
| org.biojava.nbio.structure.math |
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| org.biojava.nbio.structure.quaternary |
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| org.biojava.nbio.structure.quaternary.io |
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| org.biojava.nbio.structure.rcsb |
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| org.biojava.nbio.structure.scop |
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| org.biojava.nbio.structure.scop.server |
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| org.biojava.nbio.structure.secstruc |
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| org.biojava.nbio.structure.symmetry.analysis |
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| org.biojava.nbio.structure.symmetry.core |
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| org.biojava.nbio.structure.symmetry.geometry |
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| org.biojava.nbio.structure.symmetry.internal |
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| org.biojava.nbio.structure.symmetry.misc |
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| org.biojava.nbio.structure.symmetry.utils |
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| org.biojava.nbio.structure.validation |
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| org.biojava.nbio.structure.xtal |
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| org.biojava.nbio.structure.xtal.io |
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