ChemCompBond (biojava-structure 6.0.3 API)

java.lang.Object
- org.biojava.nbio.structure.chem.ChemCompBond

All Implemented Interfaces:

Serializable, CifBean
```
public class ChemCompBond
extends Object
implements CifBean
```
Properties of a bond in a chemical component.

Since:

6.0.0

Author:

Sebastian Bittrich

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

ChemCompBond()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`getAtomId1()`
`String`	`getAtomId2()`
`String`	`getCompId()`
`static org.slf4j.Logger`	`getLogger()`
`int`	`getNumericalBondOrder()`	Converts this ChemCompBond's value_order attribute into an int using the conversion:
`String`	`getPdbxAromaticFlag()`
`int`	`getPdbxOrdinal()`
`String`	`getPdbxStereoConfig()`
`String`	`getValueOrder()`
`void`	`setAtomId1(String atomId1)`
`void`	`setAtomId2(String atomId2)`
`void`	`setCompId(String compId)`
`void`	`setPdbxAromaticFlag(String pdbxAromaticFlag)`
`void`	`setPdbxOrdinal(int pdbxOrdinal)`
`void`	`setPdbxStereoConfig(String pdbxStereoConfig)`
`void`	`setValueOrder(String valueOrder)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- ChemCompBond
```
public ChemCompBond()
```

Method Detail

getLogger

public static org.slf4j.Logger getLogger()

getCompId
```
public String getCompId()
```

setCompId

public void setCompId(String compId)

getAtomId1
```
public String getAtomId1()
```

setAtomId1

public void setAtomId1(String atomId1)

getAtomId2
```
public String getAtomId2()
```

setAtomId2

public void setAtomId2(String atomId2)

getValueOrder
```
public String getValueOrder()
```

setValueOrder

public void setValueOrder(String valueOrder)

getPdbxAromaticFlag
```
public String getPdbxAromaticFlag()
```

setPdbxAromaticFlag

public void setPdbxAromaticFlag(String pdbxAromaticFlag)

getPdbxStereoConfig
```
public String getPdbxStereoConfig()
```

setPdbxStereoConfig

public void setPdbxStereoConfig(String pdbxStereoConfig)

getPdbxOrdinal
```
public int getPdbxOrdinal()
```

setPdbxOrdinal

public void setPdbxOrdinal(int pdbxOrdinal)

getNumericalBondOrder
```
public int getNumericalBondOrder()
```
Converts this ChemCompBond's value_order attribute into an int using the conversion:
```
        SING -> 1
        DOUB -> 2
        TRIP -> 3
        QUAD -> 4
 
```
Any other values will return -1.
(Source: http://mmcif.rcsb.org/dictionaries/mmcif_mdb.dic/Items/_chem_comp_bond. value_order.html)
Returns:

the numerical value of this ChemCompBond's bond order, or -1 if the value is non-numeric or unknown.