SequenceFunctionOrderDetector (biojava-structure 6.0.3 API)

java.lang.Object
- org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector

All Implemented Interfaces:

OrderDetector
```
public class SequenceFunctionOrderDetector
extends Object
implements OrderDetector
```
Calls Spencer's method for determining order. This method uses the sequence alignment information to guess the order of symmetry.

Since:

4.2.0

Author:

dmyersturnbull

- Constructor Summary
  
  Constructors
  Constructor Description
  
  SequenceFunctionOrderDetector()
  
  SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  int calculateOrder(AFPChain afpChain, Atom[] ca)
  
  String toString()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SequenceFunctionOrderDetector
```
public SequenceFunctionOrderDetector()
```

SequenceFunctionOrderDetector

public SequenceFunctionOrderDetector(int maxSymmetry,
                                     float minimumMetricChange)

Method Detail

calculateOrder

public int calculateOrder(AFPChain afpChain,
                          Atom[] ca)
                   throws RefinerFailedException

Specified by:: calculateOrder in interface OrderDetector
Throws:: RefinerFailedException

toString
```
public String toString()
```
Overrides:

toString in class Object