org.biojava.spark.graph

Class ShowGraph

java.lang.Object

org.biojava.spark.graph.ShowGraph

public class ShowGraph
extends Object

A class to render a Graph given a list of label names

Author:

tenorsax, Yana Valasatava (adaptation), Anthony Bradley

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ShowGraph.MyEdge

Constructor Summary

Constructors

Constructor and Description
ShowGraph(org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge> graph, String[] names) Constructor requires the graph and the labels of the vertices.

Method Summary

Modifier and Type	Method and Description
static org.jgrapht.ListenableGraph<String,ShowGraph.MyEdge>	buildGraph(double threshold, boolean showEdgeLabels)
static org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge>	getGraph()
String[]	getNames()
static void	setGraph(org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge> graph)
void	setNames(String[] names)
void	showGraph(double threshold, boolean showEdgeLabels)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ShowGraph

public ShowGraph(org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge> graph,
                 String[] names)

Constructor requires the graph and the labels of the vertices.

Parameters:

graph - the input Graph object

names - the labels of the vertices

Method Detail

showGraph

public void showGraph(double threshold,
                      boolean showEdgeLabels)

buildGraph

public static org.jgrapht.ListenableGraph<String,ShowGraph.MyEdge> buildGraph(double threshold,
                                                                              boolean showEdgeLabels)

getGraph

public static org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge> getGraph()

setGraph

public static void setGraph(org.jgrapht.Graph<Integer,org.jgrapht.graph.DefaultWeightedEdge> graph)

getNames

public String[] getNames()

setNames

public void setNames(String[] names)