org.biojava.spark.mappers

Class CalculateFrequency

java.lang.Object

org.biojava.spark.mappers.CalculateFrequency

All Implemented Interfaces:

Serializable, org.apache.spark.api.java.function.FlatMapFunction<scala.Tuple2<String,org.rcsb.mmtf.api.StructureDataInterface>,org.biojava.nbio.structure.Atom>

public class CalculateFrequency
extends Object
implements org.apache.spark.api.java.function.FlatMapFunction<scala.Tuple2<String,org.rcsb.mmtf.api.StructureDataInterface>,org.biojava.nbio.structure.Atom>

A class to calculate the frequency of a given atom defined in a AtomSelectObject object.

Author:

Anthony Bradley

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
CalculateFrequency(org.rcsb.mmtf.spark.data.AtomSelectObject selectObject) Constructor for the CalculateFrequency class.

Method Summary

Modifier and Type	Method and Description
Iterator<org.biojava.nbio.structure.Atom>	call(scala.Tuple2<String,org.rcsb.mmtf.api.StructureDataInterface> t)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CalculateFrequency

public CalculateFrequency(org.rcsb.mmtf.spark.data.AtomSelectObject selectObject)

Constructor for the CalculateFrequency class.

Parameters:

selectObject - the atoms to be elected

Method Detail

call

public Iterator<org.biojava.nbio.structure.Atom> call(scala.Tuple2<String,org.rcsb.mmtf.api.StructureDataInterface> t)
                                               throws Exception

Specified by:

call in interface org.apache.spark.api.java.function.FlatMapFunction<scala.Tuple2<String,org.rcsb.mmtf.api.StructureDataInterface>,org.biojava.nbio.structure.Atom>

Throws:

Exception