Hierarchy For All Packages

Package Hierarchies:

• demo,
• org.biojava.spark.data,
• org.biojava.spark.filter,
• org.biojava.spark.function,
• org.biojava.spark.graph,
• org.biojava.spark.mappers,
• org.biojava.spark.utils

Class Hierarchy

• java.lang.Object
  • org.biojava.spark.function.AlignmentTools (implements java.io.Serializable)
  • org.biojava.spark.data.AtomContactRDD (implements java.io.Serializable)
  • org.biojava.spark.data.AtomData
  • org.biojava.spark.utils.BiojavaSparkUtils
  • org.biojava.spark.function.BuildUndirectedGraph (implements org.apache.spark.api.java.function.VoidFunction<T>)
  • org.biojava.spark.mappers.CalculateContacts (implements org.apache.spark.api.java.function.FlatMapFunction<T,R>)
  • org.biojava.spark.mappers.CalculateFrequency (implements org.apache.spark.api.java.function.FlatMapFunction<T,R>)
  • org.biojava.spark.utils.CanonNames
  • demo.ChainAligner
  • org.biojava.spark.data.ChainDataRDD
  • demo.ClusterEcodSequences (implements java.io.Serializable)
  • org.biojava.spark.utils.ClusterSequences (implements java.io.Serializable)
  • demo.CountContacts
  • demo.CountElements
  • org.jgrapht.graph.DefaultEdge
    • org.jgrapht.graph.DefaultWeightedEdge
      • org.biojava.spark.graph.ShowGraph.MyEdge
  • org.biojava.spark.utils.EntryPoint
  • org.biojava.spark.filter.FilterCombinations (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.filter.FilterRemainingSequences (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.filter.FilterSignificantResults (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.function.FlatMapCluster (implements org.apache.spark.api.java.function.Function<T1,R>)
  • demo.FragmentAndGroup
  • demo.GetAverageCalphaDist
  • org.biojava.spark.function.GetSubsetOfSequences (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.data.GroupDataRDD
  • org.biojava.spark.function.PairwiseSequenceComparison (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.mappers.PairwiseSequenceComparison (implements org.apache.spark.api.java.function.Function<T1,R>)
  • org.biojava.spark.function.PrintClusterInfo (implements org.apache.spark.api.java.function.VoidFunction<T>)
  • org.biojava.spark.function.RandomKeyAssigner (implements org.apache.spark.api.java.function.Function<T1,R>)
  • demo.ReadFromMmcif
  • org.biojava.spark.graph.ShowGraph
  • demo.SimpleExample
  • org.biojava.spark.graph.WeightedGraph