Serialized Form (mmtf-spark 0.2.0 API)

Package demo
- Class demo.ClusterEcodSequences extends Object implements Serializable
Package org.biojava.spark.data
- Class org.biojava.spark.data.AtomContactRDD extends Object implements Serializable
  
  serialVersionUID:
  
  -1589566070085057826L
  - Serialized Fields
    - atomContactRdd
```
org.apache.spark.api.java.JavaRDD<T> atomContactRdd
```
      The private JavaRDD of AtomContact
Package org.biojava.spark.filter
- Class org.biojava.spark.filter.FilterCombinations extends Object implements Serializable
- Class org.biojava.spark.filter.FilterRemainingSequences extends Object implements Serializable
  - Serialized Fields
    - requestedIds
```
org.apache.spark.broadcast.Broadcast<T> requestedIds
```
- Class org.biojava.spark.filter.FilterSignificantResults extends Object implements Serializable
  - Serialized Fields
    - minOverlap1
```
Float minOverlap1
```
    - minOverlap2
```
Float minOverlap2
```
    - minPercentageId
```
Float minPercentageId
```
Package org.biojava.spark.function
- Class org.biojava.spark.function.AlignmentTools extends Object implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.biojava.spark.function.BuildUndirectedGraph extends Object implements Serializable
  - Serialized Fields
    - graph
```
org.jgrapht.Graph<V,E> graph
```
- Class org.biojava.spark.function.FlatMapCluster extends Object implements Serializable
- Class org.biojava.spark.function.GetSubsetOfSequences extends Object implements Serializable
  - Serialized Fields
    - requestedIds
```
org.apache.spark.broadcast.Broadcast<T> requestedIds
```
- Class org.biojava.spark.function.PairwiseSequenceComparison extends Object implements Serializable
- Class org.biojava.spark.function.PrintClusterInfo extends Object implements Serializable
  - Serialized Fields
    - clusters
```
List<E> clusters
```
- Class org.biojava.spark.function.RandomKeyAssigner extends Object implements Serializable
  - Serialized Fields
    - nrFractions
```
int nrFractions
```
Package org.biojava.spark.graph
- Class org.biojava.spark.graph.ShowGraph.MyEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable
  
  serialVersionUID:
  
  -2329441316446644067L
Package org.biojava.spark.mappers
- Class org.biojava.spark.mappers.CalculateContacts extends Object implements Serializable
  
  serialVersionUID:
  
  7102351722106317536L
  - Serialized Fields
    - cutoff
```
double cutoff
```
    - selectObjectOne
```
org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectOne
```
    - selectObjectTwo
```
org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectTwo
```
    - fast
```
boolean fast
```
- Class org.biojava.spark.mappers.CalculateFrequency extends Object implements Serializable
  
  serialVersionUID:
  
  6829051271366307056L
  - Serialized Fields
    - selectObject
```
org.rcsb.mmtf.spark.data.AtomSelectObject selectObject
```
- Class org.biojava.spark.mappers.PairwiseSequenceComparison extends Object implements Serializable
  
  serialVersionUID:
  
  8962410797026956531L
  - Serialized Fields
    - sequences
```
List<E> sequences
```
    - minOverlap
```
float minOverlap
```
    - minPercid
```
float minPercid
```
Package org.biojava.spark.utils
- Class org.biojava.spark.utils.ClusterSequences extends Object implements Serializable
  - Serialized Fields
    - nrFractions
```
int nrFractions
```
    - minOverlap1
```
Float minOverlap1
```
    - minOverlap2
```
Float minOverlap2
```
    - minPercentageId
```
Float minPercentageId
```

Serialized Form

Package demo

Class demo.ClusterEcodSequences extends Object implements Serializable

Package org.biojava.spark.data

Class org.biojava.spark.data.AtomContactRDD extends Object implements Serializable

Serialized Fields

atomContactRdd

Package org.biojava.spark.filter

Class org.biojava.spark.filter.FilterCombinations extends Object implements Serializable

Class org.biojava.spark.filter.FilterRemainingSequences extends Object implements Serializable

Serialized Fields

requestedIds

Class org.biojava.spark.filter.FilterSignificantResults extends Object implements Serializable

Serialized Fields

minOverlap1

minOverlap2

minPercentageId

Package org.biojava.spark.function

Class org.biojava.spark.function.AlignmentTools extends Object implements Serializable

Class org.biojava.spark.function.BuildUndirectedGraph extends Object implements Serializable

Serialized Fields

graph

Class org.biojava.spark.function.FlatMapCluster extends Object implements Serializable

Class org.biojava.spark.function.GetSubsetOfSequences extends Object implements Serializable

Serialized Fields

requestedIds

Class org.biojava.spark.function.PairwiseSequenceComparison extends Object implements Serializable

Class org.biojava.spark.function.PrintClusterInfo extends Object implements Serializable

Serialized Fields

clusters

Class org.biojava.spark.function.RandomKeyAssigner extends Object implements Serializable

Serialized Fields

nrFractions

Package org.biojava.spark.graph

Class org.biojava.spark.graph.ShowGraph.MyEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable

Package org.biojava.spark.mappers

Class org.biojava.spark.mappers.CalculateContacts extends Object implements Serializable

Serialized Fields

cutoff

selectObjectOne

selectObjectTwo

fast

Class org.biojava.spark.mappers.CalculateFrequency extends Object implements Serializable

Serialized Fields

selectObject

Class org.biojava.spark.mappers.PairwiseSequenceComparison extends Object implements Serializable

Serialized Fields

sequences

minOverlap

minPercid

Package org.biojava.spark.utils

Class org.biojava.spark.utils.ClusterSequences extends Object implements Serializable

Serialized Fields

nrFractions

minOverlap1

minOverlap2

minPercentageId