Package demo

Class Summary

Class	Description
ChemCompDistribution
DemoAsa
DemoAtomCache	Example of how to load PDB files using the AtomCache class.
DemoBerkeleyScop	A demo for how to use the Berkeley version of SCOP instead of the default UK-SCOP
DemoBioAssemblies
DemoCATH	An example for how to access CATH data.
DemoCE	Example of how to run a structure alignment using the CE algorithm.
DemoCeSymm	Quick demo of how to call CE-Symm programmatically.
DemoChangeChemCompProvider	This demo shows how to use an alternative ChemCompProvider.
DemoCommandLineStartup
DemoContacts
DemoCrystalInterfaces
DemoDomainsplit
DemoFATCAT
DemoLoadSecStruc	Demonstration of how to load a Structure with the SS information, either from the PDB file annotation (Author's assignment) or from the DSSP file in the PDB servers (DSSP assignment).
DemoLoadStructure	Example for how to load protein structures (from PDB files).
DemoMMCIFReader	An example of how to read MMcif files
DemoMmcifToPdbConverter	An example of how to convert mmCIF file to PDB file
DemoMmtfReader	Class to show how to read a Biojava structure using MMTF
DemoMmtfWriter
DemoMultipleMC	Demo for running the MultipleMC Algorithm on a protein family.
DemoQsAlign	Demo on how to use programatically QsAlign for the alignment of quaternary structures.
DemoSCOP	A class demonstrating the use of the SCOP parsing tools
DemoSecStrucCalc	Demonstration on how to use the Secondary Structure Prediction (DSSP) implementation in BioJava and obtain different SS representations and outputs.
DemoSymmetry	A demo on how to use the quaternary symmetry detection algorithms.