ChemCompAtom (biojava-structure 6.0.0-alpha2 API)

java.lang.Object
- org.biojava.nbio.structure.chem.ChemCompAtom

All Implemented Interfaces:

Serializable, CifBean
```
public class ChemCompAtom
extends Object
implements CifBean
```
Properties of an atom of a chemical component.

Since:

6.0.0

Author:

Sebastian Bittrich

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description

ChemCompAtom()

Constructors
Constructor and Description
`ChemCompAtom()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getAltAtomId()`
`String`	`getAtomId()`
`int`	`getCharge()`
`String`	`getCompId()`
`double`	`getModelCartnX()`
`double`	`getModelCartnY()`
`double`	`getModelCartnZ()`
`int`	`getPdbxAlign()`
`String`	`getPdbxAromaticFlag()`
`String`	`getPdbxComponentAtomId()`
`String`	`getPdbxComponentCompId()`
`String`	`getPdbxComponentId()`
`String`	`getPdbxLeavingAtomFlag()`
`double`	`getPdbxModelCartnXIdeal()`
`double`	`getPdbxModelCartnYIdeal()`
`double`	`getPdbxModelCartnZIdeal()`
`int`	`getPdbxOrdinal()`
`String`	`getPdbxPolymerType()`
`String`	`getPdbxRefId()`
`String`	`getPdbxResidueNumbering()`
`String`	`getPdbxStereoConfig()`
`String`	`getTypeSymbol()`
`void`	`setAltAtomId(String altAtomId)`
`void`	`setAtomId(String atomId)`
`void`	`setCharge(int charge)`
`void`	`setCompId(String compId)`
`void`	`setModelCartnX(double modelCartnX)`
`void`	`setModelCartnY(double modelCartnY)`
`void`	`setModelCartnZ(double modelCartnZ)`
`void`	`setPdbxAlign(int pdbxAlign)`
`void`	`setPdbxAromaticFlag(String pdbxAromaticFlag)`
`void`	`setPdbxComponentAtomId(String pdbxComponentAtomId)`
`void`	`setPdbxComponentCompId(String pdbxComponentCompId)`
`void`	`setPdbxComponentId(String pdbxComponentId)`
`void`	`setPdbxLeavingAtomFlag(String pdbxLeavingAtomFlag)`
`void`	`setPdbxModelCartnXIdeal(double pdbxModelCartnXIdeal)`
`void`	`setPdbxModelCartnYIdeal(double pdbxModelCartnYIdeal)`
`void`	`setPdbxModelCartnZIdeal(double pdbxModelCartnZIdeal)`
`void`	`setPdbxOrdinal(int pdbxOrdinal)`
`void`	`setPdbxPolymerType(String pdbxPolymerType)`
`void`	`setPdbxRefId(String pdbxRefId)`
`void`	`setPdbxResidueNumbering(String pdbxResidueNumbering)`
`void`	`setPdbxStereoConfig(String pdbxStereoConfig)`
`void`	`setTypeSymbol(String typeSymbol)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- ChemCompAtom
```
public ChemCompAtom()
```

Method Detail

getCompId
```
public String getCompId()
```

setCompId
```
public void setCompId(String compId)
```

getAtomId
```
public String getAtomId()
```

setAtomId
```
public void setAtomId(String atomId)
```

getAltAtomId
```
public String getAltAtomId()
```

setAltAtomId

public void setAltAtomId(String altAtomId)

getTypeSymbol
```
public String getTypeSymbol()
```

setTypeSymbol

public void setTypeSymbol(String typeSymbol)

getCharge
```
public int getCharge()
```

setCharge
```
public void setCharge(int charge)
```

getPdbxAlign
```
public int getPdbxAlign()
```

setPdbxAlign

public void setPdbxAlign(int pdbxAlign)

getPdbxAromaticFlag
```
public String getPdbxAromaticFlag()
```

setPdbxAromaticFlag

public void setPdbxAromaticFlag(String pdbxAromaticFlag)

getPdbxLeavingAtomFlag

public String getPdbxLeavingAtomFlag()

setPdbxLeavingAtomFlag

public void setPdbxLeavingAtomFlag(String pdbxLeavingAtomFlag)

getPdbxStereoConfig
```
public String getPdbxStereoConfig()
```

setPdbxStereoConfig

public void setPdbxStereoConfig(String pdbxStereoConfig)

getModelCartnX
```
public double getModelCartnX()
```

setModelCartnX

public void setModelCartnX(double modelCartnX)

getModelCartnY
```
public double getModelCartnY()
```

setModelCartnY

public void setModelCartnY(double modelCartnY)

getModelCartnZ
```
public double getModelCartnZ()
```

setModelCartnZ

public void setModelCartnZ(double modelCartnZ)

getPdbxModelCartnXIdeal

public double getPdbxModelCartnXIdeal()

setPdbxModelCartnXIdeal

public void setPdbxModelCartnXIdeal(double pdbxModelCartnXIdeal)

getPdbxModelCartnYIdeal

public double getPdbxModelCartnYIdeal()

setPdbxModelCartnYIdeal

public void setPdbxModelCartnYIdeal(double pdbxModelCartnYIdeal)

getPdbxModelCartnZIdeal

public double getPdbxModelCartnZIdeal()

setPdbxModelCartnZIdeal

public void setPdbxModelCartnZIdeal(double pdbxModelCartnZIdeal)

getPdbxComponentCompId

public String getPdbxComponentCompId()

setPdbxComponentCompId

public void setPdbxComponentCompId(String pdbxComponentCompId)

getPdbxResidueNumbering

public String getPdbxResidueNumbering()

setPdbxResidueNumbering

public void setPdbxResidueNumbering(String pdbxResidueNumbering)

getPdbxComponentAtomId

public String getPdbxComponentAtomId()

setPdbxComponentAtomId

public void setPdbxComponentAtomId(String pdbxComponentAtomId)

getPdbxPolymerType
```
public String getPdbxPolymerType()
```

setPdbxPolymerType

public void setPdbxPolymerType(String pdbxPolymerType)

getPdbxRefId
```
public String getPdbxRefId()
```

setPdbxRefId

public void setPdbxRefId(String pdbxRefId)

getPdbxComponentId
```
public String getPdbxComponentId()
```

setPdbxComponentId

public void setPdbxComponentId(String pdbxComponentId)

getPdbxOrdinal
```
public int getPdbxOrdinal()
```

setPdbxOrdinal

public void setPdbxOrdinal(int pdbxOrdinal)

Class ChemCompAtom

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ChemCompAtom

Method Detail

getCompId

setCompId

getAtomId

setAtomId

getAltAtomId

setAltAtomId

getTypeSymbol

setTypeSymbol

getCharge

setCharge

getPdbxAlign

setPdbxAlign

getPdbxAromaticFlag

setPdbxAromaticFlag

getPdbxLeavingAtomFlag

setPdbxLeavingAtomFlag

getPdbxStereoConfig

setPdbxStereoConfig

getModelCartnX

setModelCartnX

getModelCartnY

setModelCartnY

getModelCartnZ

setModelCartnZ

getPdbxModelCartnXIdeal

setPdbxModelCartnXIdeal

getPdbxModelCartnYIdeal

setPdbxModelCartnYIdeal

getPdbxModelCartnZIdeal

setPdbxModelCartnZIdeal

getPdbxComponentCompId

setPdbxComponentCompId

getPdbxResidueNumbering

setPdbxResidueNumbering

getPdbxComponentAtomId

setPdbxComponentAtomId

getPdbxPolymerType

setPdbxPolymerType

getPdbxRefId

setPdbxRefId

getPdbxComponentId

setPdbxComponentId

getPdbxOrdinal

setPdbxOrdinal