Package org.biojava.nbio.structure.chem

Interface Summary

Interface	Description
ChemCompProvider	Interface that is implemented by all classes that can provide ChemComp definitions.

Class Summary

Class	Description
AllChemCompProvider	A ChemComp provider that downloads and caches the components.cif file from the wwPDB site.
ChemComp	Properties of a chemical component.
ChemCompAtom	Properties of an atom of a chemical component.
ChemCompBond	Properties of a bond in a chemical component.
ChemCompDescriptor	Properties of the chemical component descriptor.
ChemCompGroupFactory
ChemCompTools
ChemicalComponentDictionary	A representation of the Chemical Component Dictionary.
DownloadChemCompProvider	This provider of chemical components can download and cache chemical component definition files from the RCSB PDB web site.
MetalBondDistance	A bean that contains cutoffs for correctly detecting metal bonds.
ReducedChemCompProvider	Unlike the DownloadChemCompProvider, this ChemCompProvider does not download any chem comp definitions.
ZipChemCompProvider	This chemical component provider retrieves and caches chemical component definition files from a zip archive specified in its construction.

Enum Summary

Enum	Description
PolymerType	Enumerates the classification of polymers.
ResidueType	Enumerates the possible classifications of residues.