org.biojava.nbio.structure.io.cif

Class ChemCompConsumerImpl

java.lang.Object

org.biojava.nbio.structure.io.cif.ChemCompConsumerImpl

All Implemented Interfaces:

ChemCompConsumer, CifFileConsumer<ChemicalComponentDictionary>

public class ChemCompConsumerImpl
extends Object
implements ChemCompConsumer

Consumes a CCD file to create the ChemicalComponentDictionary.

Author:

Sebastian Bittrich

Constructor Summary

Constructors

Constructor and Description
ChemCompConsumerImpl()

Method Summary

Modifier and Type	Method and Description
void	consumeChemComp(org.rcsb.cif.schema.mm.ChemComp c) Consume a particular Cif category.
void	consumeChemCompAtom(org.rcsb.cif.schema.mm.ChemCompAtom atom) Consume a particular Cif category.
void	consumeChemCompBond(org.rcsb.cif.schema.mm.ChemCompBond bond) Consume a particular Cif category.
void	finish() Ultimate setup which can include steps which require several categories to be available and integrate them into the final container.
ChemicalComponentDictionary	getContainer() Retrieve the created container representing a CIF file.
void	prepare() Setup routine which initializes a new container.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChemCompConsumerImpl

public ChemCompConsumerImpl()

Method Detail

consumeChemComp

public void consumeChemComp(org.rcsb.cif.schema.mm.ChemComp c)

Description copied from interface: ChemCompConsumer

Consume a particular Cif category.

Specified by:

consumeChemComp in interface ChemCompConsumer

Parameters:

c - data

consumeChemCompAtom

public void consumeChemCompAtom(org.rcsb.cif.schema.mm.ChemCompAtom atom)

Description copied from interface: ChemCompConsumer

Consume a particular Cif category.

Specified by:

consumeChemCompAtom in interface ChemCompConsumer

Parameters:

atom - data

consumeChemCompBond

public void consumeChemCompBond(org.rcsb.cif.schema.mm.ChemCompBond bond)

Description copied from interface: ChemCompConsumer

Consume a particular Cif category.

Specified by:

consumeChemCompBond in interface ChemCompConsumer

Parameters:

bond - data

prepare

public void prepare()

Description copied from interface: CifFileConsumer

Setup routine which initializes a new container.

Specified by:

prepare in interface CifFileConsumer<ChemicalComponentDictionary>

finish

public void finish()

Description copied from interface: CifFileConsumer

Ultimate setup which can include steps which require several categories to be available and integrate them into the final container.

Specified by:

finish in interface CifFileConsumer<ChemicalComponentDictionary>

getContainer

public ChemicalComponentDictionary getContainer()

Description copied from interface: CifFileConsumer

Retrieve the created container representing a CIF file.

Specified by:

getContainer in interface CifFileConsumer<ChemicalComponentDictionary>

Returns:

all desired information wrapped as object of type S