org.biojava.nbio.structure.io.cif

Interface CifStructureConsumer

All Superinterfaces:

CifFileConsumer<Structure>

All Known Implementing Classes:

CifStructureConsumerImpl

public interface CifStructureConsumer
extends CifFileConsumer<Structure>

Defines the categories to consume during CIF parsing.

Since:

6.0.0

Author:

Sebastian Bittrich

Method Summary

Modifier and Type	Method and Description
void	consumeAtomSite(org.rcsb.cif.schema.mm.AtomSite atomSite) Consume a particular Cif category.
void	consumeAtomSites(org.rcsb.cif.schema.mm.AtomSites atomSites) Consume a particular Cif category.
void	consumeAuditAuthor(org.rcsb.cif.schema.mm.AuditAuthor auditAuthor) Consume a particular Cif category.
void	consumeCell(org.rcsb.cif.schema.mm.Cell cell) Consume a particular Cif category.
void	consumeChemComp(org.rcsb.cif.schema.mm.ChemComp chemComp) Consume a particular Cif category.
void	consumeChemCompBond(org.rcsb.cif.schema.mm.ChemCompBond chemCompBond) Consume a particular Cif category.
void	consumeDatabasePDBRemark(org.rcsb.cif.schema.mm.DatabasePDBRemark databasePDBremark) Consume a particular Cif category.
void	consumeDatabasePDBRev(org.rcsb.cif.schema.mm.DatabasePDBRev databasePDBrev) Consume a particular Cif category.
void	consumeDatabasePDBRevRecord(org.rcsb.cif.schema.mm.DatabasePDBRevRecord databasePDBrevRecord) Consume a particular Cif category.
void	consumeEntity(org.rcsb.cif.schema.mm.Entity entity) Consume a particular Cif category.
void	consumeEntityPoly(org.rcsb.cif.schema.mm.EntityPoly entityPoly) Consume a particular Cif category.
void	consumeEntityPolySeq(org.rcsb.cif.schema.mm.EntityPolySeq entityPolySeq) Consume a particular Cif category.
void	consumeEntitySrcGen(org.rcsb.cif.schema.mm.EntitySrcGen entitySrcGen) Consume a particular Cif category.
void	consumeEntitySrcNat(org.rcsb.cif.schema.mm.EntitySrcNat entitySrcNat) Consume a particular Cif category.
void	consumeEntitySrcSyn(org.rcsb.cif.schema.mm.PdbxEntitySrcSyn entitySrcSyn) Consume a particular Cif category.
void	consumeExptl(org.rcsb.cif.schema.mm.Exptl exptl) Consume a particular Cif category.
void	consumePdbxAuditRevisionHistory(org.rcsb.cif.schema.mm.PdbxAuditRevisionHistory pdbxAuditRevisionHistory) Consume a particular Cif category.
void	consumePdbxChemCompIdentifier(org.rcsb.cif.schema.mm.PdbxChemCompIdentifier pdbxChemCompIdentifier) Consume a particular Cif category.
void	consumePdbxDatabaseStatus(org.rcsb.cif.schema.mm.PdbxDatabaseStatus pdbxDatabaseStatus) Consume a particular Cif category.
void	consumePdbxEntityBranchDescriptor(org.rcsb.cif.schema.mm.PdbxEntityBranchDescriptor pdbxEntityBranchDescriptor) Consume a particular Cif category.
void	consumePdbxMolecule(org.rcsb.cif.schema.mm.PdbxMolecule pdbxMolecule) Consume a particular Cif category.
void	consumePdbxMoleculeFeatures(org.rcsb.cif.schema.mm.PdbxMoleculeFeatures pdbxMoleculeFeatures) Consume a particular Cif category.
void	consumePdbxNonpolyScheme(org.rcsb.cif.schema.mm.PdbxNonpolyScheme pdbxNonpolyScheme) Consume a particular Cif category.
void	consumePdbxReferenceEntityLink(org.rcsb.cif.schema.mm.PdbxReferenceEntityLink pdbxReferenceEntityLink) Consume a particular Cif category.
void	consumePdbxReferenceEntityList(org.rcsb.cif.schema.mm.PdbxReferenceEntityList pdbxReferenceEntityList) Consume a particular Cif category.
void	consumePdbxReferenceEntityPolyLink(org.rcsb.cif.schema.mm.PdbxReferenceEntityPolyLink pdbxReferenceEntityPolyLink) Consume a particular Cif category.
void	consumePdbxStructAssembly(org.rcsb.cif.schema.mm.PdbxStructAssembly pdbxStructAssembly) Consume a particular Cif category.
void	consumePdbxStructAssemblyGen(org.rcsb.cif.schema.mm.PdbxStructAssemblyGen pdbxStructAssemblyGen) Consume a particular Cif category.
void	consumePdbxStructModResidue(org.rcsb.cif.schema.mm.PdbxStructModResidue pdbxStructModResidue) Consume a particular Cif category.
void	consumePdbxStructOperList(org.rcsb.cif.schema.mm.PdbxStructOperList pdbxStructOperList) Consume a particular Cif category.
void	consumeRefine(org.rcsb.cif.schema.mm.Refine refine) Consume a particular Cif category.
void	consumeStruct(org.rcsb.cif.schema.mm.Struct struct) Consume a particular Cif category.
void	consumeStructAsym(org.rcsb.cif.schema.mm.StructAsym structAsym) Consume a particular Cif category.
void	consumeStructConf(org.rcsb.cif.schema.mm.StructConf structConf) Consume a particular Cif category.
void	consumeStructConn(org.rcsb.cif.schema.mm.StructConn structConn) Consume a particular Cif category.
void	consumeStructConnType(org.rcsb.cif.schema.mm.StructConnType structConnType) Consume a particular Cif category.
void	consumeStructKeywords(org.rcsb.cif.schema.mm.StructKeywords structKeywords) Consume a particular Cif category.
void	consumeStructNcsOper(org.rcsb.cif.schema.mm.StructNcsOper structNcsOper) Consume a particular Cif category.
void	consumeStructRef(org.rcsb.cif.schema.mm.StructRef structRef) Consume a particular Cif category.
void	consumeStructRefSeq(org.rcsb.cif.schema.mm.StructRefSeq structRefSeq) Consume a particular Cif category.
void	consumeStructRefSeqDif(org.rcsb.cif.schema.mm.StructRefSeqDif structRefSeqDif) Consume a particular Cif category.
void	consumeStructSheetRange(org.rcsb.cif.schema.mm.StructSheetRange structSheetRange) Consume a particular Cif category.
void	consumeStructSite(org.rcsb.cif.schema.mm.StructSite structSite) Consume a particular Cif category.
void	consumeStructSiteGen(org.rcsb.cif.schema.mm.StructSiteGen structSiteGen) Consume a particular Cif category.
void	consumeSymmetry(org.rcsb.cif.schema.mm.Symmetry symmetry) Consume a particular Cif category.

Methods inherited from interface org.biojava.nbio.structure.io.cif.CifFileConsumer

finish, getContainer, prepare

Method Detail

consumeAtomSite

void consumeAtomSite(org.rcsb.cif.schema.mm.AtomSite atomSite)

Consume a particular Cif category.

Parameters:

atomSite - data

consumeAtomSites

void consumeAtomSites(org.rcsb.cif.schema.mm.AtomSites atomSites)

Consume a particular Cif category.

Parameters:

atomSites - data

consumeAuditAuthor

void consumeAuditAuthor(org.rcsb.cif.schema.mm.AuditAuthor auditAuthor)

Consume a particular Cif category.

Parameters:

auditAuthor - data

consumeCell

void consumeCell(org.rcsb.cif.schema.mm.Cell cell)

Consume a particular Cif category.

Parameters:

cell - data

consumeChemComp

void consumeChemComp(org.rcsb.cif.schema.mm.ChemComp chemComp)

Consume a particular Cif category.

Parameters:

chemComp - data

consumeChemCompBond

void consumeChemCompBond(org.rcsb.cif.schema.mm.ChemCompBond chemCompBond)

Consume a particular Cif category.

Parameters:

chemCompBond - data

consumeDatabasePDBRemark

void consumeDatabasePDBRemark(org.rcsb.cif.schema.mm.DatabasePDBRemark databasePDBremark)

Consume a particular Cif category.

Parameters:

databasePDBremark - data

consumeDatabasePDBRev

void consumeDatabasePDBRev(org.rcsb.cif.schema.mm.DatabasePDBRev databasePDBrev)

Consume a particular Cif category.

Parameters:

databasePDBrev - data

consumeDatabasePDBRevRecord

void consumeDatabasePDBRevRecord(org.rcsb.cif.schema.mm.DatabasePDBRevRecord databasePDBrevRecord)

Consume a particular Cif category.

Parameters:

databasePDBrevRecord - data

consumeEntity

void consumeEntity(org.rcsb.cif.schema.mm.Entity entity)

Consume a particular Cif category.

Parameters:

entity - data

consumeEntityPoly

void consumeEntityPoly(org.rcsb.cif.schema.mm.EntityPoly entityPoly)

Consume a particular Cif category.

Parameters:

entityPoly - data

consumeEntitySrcGen

void consumeEntitySrcGen(org.rcsb.cif.schema.mm.EntitySrcGen entitySrcGen)

Consume a particular Cif category.

Parameters:

entitySrcGen - data

consumeEntitySrcNat

void consumeEntitySrcNat(org.rcsb.cif.schema.mm.EntitySrcNat entitySrcNat)

Consume a particular Cif category.

Parameters:

entitySrcNat - data

consumeEntitySrcSyn

void consumeEntitySrcSyn(org.rcsb.cif.schema.mm.PdbxEntitySrcSyn entitySrcSyn)

Consume a particular Cif category.

Parameters:

entitySrcSyn - data

consumeEntityPolySeq

void consumeEntityPolySeq(org.rcsb.cif.schema.mm.EntityPolySeq entityPolySeq)

Consume a particular Cif category.

Parameters:

entityPolySeq - data

consumeExptl

void consumeExptl(org.rcsb.cif.schema.mm.Exptl exptl)

Consume a particular Cif category.

Parameters:

exptl - data

consumePdbxAuditRevisionHistory

void consumePdbxAuditRevisionHistory(org.rcsb.cif.schema.mm.PdbxAuditRevisionHistory pdbxAuditRevisionHistory)

Consume a particular Cif category.

Parameters:

pdbxAuditRevisionHistory - data

consumePdbxChemCompIdentifier

void consumePdbxChemCompIdentifier(org.rcsb.cif.schema.mm.PdbxChemCompIdentifier pdbxChemCompIdentifier)

Consume a particular Cif category.

Parameters:

pdbxChemCompIdentifier - data

consumePdbxDatabaseStatus

void consumePdbxDatabaseStatus(org.rcsb.cif.schema.mm.PdbxDatabaseStatus pdbxDatabaseStatus)

Consume a particular Cif category.

Parameters:

pdbxDatabaseStatus - data

consumePdbxEntityBranchDescriptor

void consumePdbxEntityBranchDescriptor(org.rcsb.cif.schema.mm.PdbxEntityBranchDescriptor pdbxEntityBranchDescriptor)

Consume a particular Cif category.

Parameters:

pdbxEntityBranchDescriptor - data

consumePdbxMolecule

void consumePdbxMolecule(org.rcsb.cif.schema.mm.PdbxMolecule pdbxMolecule)

Consume a particular Cif category.

Parameters:

pdbxMolecule - data

consumePdbxMoleculeFeatures

void consumePdbxMoleculeFeatures(org.rcsb.cif.schema.mm.PdbxMoleculeFeatures pdbxMoleculeFeatures)

Consume a particular Cif category.

Parameters:

pdbxMoleculeFeatures - data

consumePdbxNonpolyScheme

void consumePdbxNonpolyScheme(org.rcsb.cif.schema.mm.PdbxNonpolyScheme pdbxNonpolyScheme)

Consume a particular Cif category.

Parameters:

pdbxNonpolyScheme - data

consumePdbxReferenceEntityLink

void consumePdbxReferenceEntityLink(org.rcsb.cif.schema.mm.PdbxReferenceEntityLink pdbxReferenceEntityLink)

Consume a particular Cif category.

Parameters:

pdbxReferenceEntityLink - data

consumePdbxReferenceEntityList

void consumePdbxReferenceEntityList(org.rcsb.cif.schema.mm.PdbxReferenceEntityList pdbxReferenceEntityList)

Consume a particular Cif category.

Parameters:

pdbxReferenceEntityList - data

consumePdbxReferenceEntityPolyLink

void consumePdbxReferenceEntityPolyLink(org.rcsb.cif.schema.mm.PdbxReferenceEntityPolyLink pdbxReferenceEntityPolyLink)

Consume a particular Cif category.

Parameters:

pdbxReferenceEntityPolyLink - data

consumePdbxStructAssembly

void consumePdbxStructAssembly(org.rcsb.cif.schema.mm.PdbxStructAssembly pdbxStructAssembly)

Consume a particular Cif category.

Parameters:

pdbxStructAssembly - data

consumePdbxStructAssemblyGen

void consumePdbxStructAssemblyGen(org.rcsb.cif.schema.mm.PdbxStructAssemblyGen pdbxStructAssemblyGen)

Consume a particular Cif category.

Parameters:

pdbxStructAssemblyGen - data

consumePdbxStructModResidue

void consumePdbxStructModResidue(org.rcsb.cif.schema.mm.PdbxStructModResidue pdbxStructModResidue)

Consume a particular Cif category.

Parameters:

pdbxStructModResidue - data

consumePdbxStructOperList

void consumePdbxStructOperList(org.rcsb.cif.schema.mm.PdbxStructOperList pdbxStructOperList)

Consume a particular Cif category.

Parameters:

pdbxStructOperList - data

consumeRefine

void consumeRefine(org.rcsb.cif.schema.mm.Refine refine)

Consume a particular Cif category.

Parameters:

refine - data

consumeStruct

void consumeStruct(org.rcsb.cif.schema.mm.Struct struct)

Consume a particular Cif category.

Parameters:

struct - data

consumeStructAsym

void consumeStructAsym(org.rcsb.cif.schema.mm.StructAsym structAsym)

Consume a particular Cif category.

Parameters:

structAsym - data

consumeStructConf

void consumeStructConf(org.rcsb.cif.schema.mm.StructConf structConf)

Consume a particular Cif category.

Parameters:

structConf - data

consumeStructConn

void consumeStructConn(org.rcsb.cif.schema.mm.StructConn structConn)

Consume a particular Cif category.

Parameters:

structConn - data

consumeStructConnType

void consumeStructConnType(org.rcsb.cif.schema.mm.StructConnType structConnType)

Consume a particular Cif category.

Parameters:

structConnType - data

consumeStructKeywords

void consumeStructKeywords(org.rcsb.cif.schema.mm.StructKeywords structKeywords)

Consume a particular Cif category.

Parameters:

structKeywords - data

consumeStructNcsOper

void consumeStructNcsOper(org.rcsb.cif.schema.mm.StructNcsOper structNcsOper)

Consume a particular Cif category.

Parameters:

structNcsOper - data

consumeStructRef

void consumeStructRef(org.rcsb.cif.schema.mm.StructRef structRef)

Consume a particular Cif category.

Parameters:

structRef - data

consumeStructRefSeq

void consumeStructRefSeq(org.rcsb.cif.schema.mm.StructRefSeq structRefSeq)

Consume a particular Cif category.

Parameters:

structRefSeq - data

consumeStructRefSeqDif

void consumeStructRefSeqDif(org.rcsb.cif.schema.mm.StructRefSeqDif structRefSeqDif)

Consume a particular Cif category.

Parameters:

structRefSeqDif - data

consumeStructSheetRange

void consumeStructSheetRange(org.rcsb.cif.schema.mm.StructSheetRange structSheetRange)

Consume a particular Cif category.

Parameters:

structSheetRange - data

consumeStructSite

void consumeStructSite(org.rcsb.cif.schema.mm.StructSite structSite)

Consume a particular Cif category.

Parameters:

structSite - data

consumeStructSiteGen

void consumeStructSiteGen(org.rcsb.cif.schema.mm.StructSiteGen structSiteGen)

Consume a particular Cif category.

Parameters:

structSiteGen - data

consumeSymmetry

void consumeSymmetry(org.rcsb.cif.schema.mm.Symmetry symmetry)

Consume a particular Cif category.

Parameters:

symmetry - data