Uses of Class
org.biojava.nbio.ws.hmmer.HmmerResult

Packages that use HmmerResult

Package	Description
org.biojava.nbio.ws.hmmer

Uses of HmmerResult in org.biojava.nbio.ws.hmmer

Methods in org.biojava.nbio.ws.hmmer that return types with arguments of type HmmerResult

Modifier and Type	Method and Description
java.util.SortedSet<HmmerResult>	RemoteHmmerScan.scan(ProteinSequence sequence)
java.util.SortedSet<HmmerResult>	HmmerScan.scan(ProteinSequence sequence)
java.util.SortedSet<HmmerResult>	RemoteHmmerScan.scan(ProteinSequence sequence, java.net.URL serviceLocation) Scans a protein sequence for Pfam profile matches.

Methods in org.biojava.nbio.ws.hmmer with parameters of type HmmerResult

Modifier and Type	Method and Description
int	HmmerResult.compareTo(HmmerResult o)
int	HmmerResult.getOverlapLength(HmmerResult other) Get the overlap between two HmmerResult objects