Hierarchy For All Packages

Package Hierarchies:

• demo,
• org.biojava.nbio.ws.alignment,
• org.biojava.nbio.ws.alignment.qblast,
• org.biojava.nbio.ws.hmmer

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.ws.alignment.qblast.BlastJob
  • demo.HmmerDemo
  • org.biojava.nbio.ws.hmmer.HmmerDomain (implements java.lang.Comparable<T>, java.io.Serializable)
  • org.biojava.nbio.ws.hmmer.HmmerResult (implements java.lang.Comparable<T>, java.io.Serializable)
  • org.biojava.nbio.ws.alignment.qblast.MapToStringTransformer
  • org.biojava.nbio.ws.alignment.qblast.NCBIQBlastAlignmentProperties (implements org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentProperties)
  • org.biojava.nbio.ws.alignment.qblast.NCBIQBlastOutputProperties (implements org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentOutputProperties)
  • org.biojava.nbio.ws.alignment.qblast.NCBIQBlastService (implements org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentService)
  • demo.NCBIQBlastServiceDemo
  • org.biojava.nbio.ws.hmmer.RemoteHmmerScan (implements org.biojava.nbio.ws.hmmer.HmmerScan)

Interface Hierarchy

• org.biojava.nbio.ws.hmmer.HmmerScan
• org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentService
• java.io.Serializable
  • org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentOutputProperties
  • org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentProperties

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.ws.alignment.qblast.BlastAlignmentParameterEnum
    • org.biojava.nbio.ws.alignment.qblast.BlastMatrixEnum
    • org.biojava.nbio.ws.alignment.qblast.BlastOutputAlignmentFormatEnum
    • org.biojava.nbio.ws.alignment.qblast.BlastOutputFormatEnum
    • org.biojava.nbio.ws.alignment.qblast.BlastOutputParameterEnum
    • org.biojava.nbio.ws.alignment.qblast.BlastProgramEnum