Index (java-util 1.4.23 API)

A B C D E F G H I J K L M N O P R S T U V W X Z _

A

accept(double) - Method in class com.simiacryptus.util.data.DoubleStatistics
accept(double[]) - Method in class com.simiacryptus.util.data.DoubleStatistics: Accept double statistics.
add(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Add double [ ].
add(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil: Add list.
add(T) - Method in class com.simiacryptus.util.CountCollection: Add int.
add(T, int) - Method in class com.simiacryptus.util.CountCollection: Add int.
add(double...) - Method in class com.simiacryptus.util.data.PercentileStatistics
add(double...) - Method in class com.simiacryptus.util.data.ScalarStatistics: Add.
add(double) - Method in class com.simiacryptus.util.data.ScalarStatistics: Add.
add(ScalarStatistics) - Method in class com.simiacryptus.util.data.ScalarStatistics: Add scalar statistics.
add(SerialArrayList) - Method in class com.simiacryptus.util.data.SerialArrayList: Add serial array list.
add(U) - Method in class com.simiacryptus.util.data.SerialArrayList: Add int.
add(DoubleSupplier, double[]) - Static method in class com.simiacryptus.util.Util: Add.
addAll(Collection) - Method in class com.simiacryptus.util.data.SerialArrayList: Add all int.
addAsyncHandler(CharSequence, String, Consumer<OutputStream>, boolean) - Method in class com.simiacryptus.util.StreamNanoHTTPD: Add async handler.
addConst(CharSequence, Object) - Method in class com.simiacryptus.util.MonitoredObject: Add const monitored object.
addField(CharSequence, Supplier<Object>) - Method in class com.simiacryptus.util.MonitoredObject: Add field monitored object.
addHandler(CharSequence, String, Consumer<OutputStream>) - Method in class com.simiacryptus.util.FileNanoHTTPD: Add sync handler.
addObj(CharSequence, MonitoredItem) - Method in class com.simiacryptus.util.MonitoredObject: Add obj monitored object.
addSessionHandler(CharSequence, Function<NanoHTTPD.IHTTPSession, NanoHTTPD.Response>) - Method in class com.simiacryptus.util.FileNanoHTTPD: Add session handler function.
anchor(CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Anchor string.
anchorId() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Anchor id string.
appendFrontMatterProperty(CharSequence, CharSequence, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: Append front matter property.
apply(Function<T, U>) - Method in class com.simiacryptus.util.lang.ResourcePool: With.
apply(Consumer<T>) - Method in class com.simiacryptus.util.lang.ResourcePool: With.
apply(Function<T, U>, Predicate<T>) - Method in class com.simiacryptus.util.lang.ResourcePool: With.
apply(Consumer<T>, Predicate<T>) - Method in class com.simiacryptus.util.lang.ResourcePool: With.
apply(Consumer<T>) - Method in class com.simiacryptus.util.lang.StaticResourcePool: With u.
apply(Consumer<T>, Predicate<T>, boolean) - Method in class com.simiacryptus.util.lang.StaticResourcePool: With u.
ArrayUtil - Class in com.simiacryptus.util: The type Array util.
ArrayUtil() - Constructor for class com.simiacryptus.util.ArrayUtil
asyncHandler(ExecutorService, String, Consumer<OutputStream>, boolean) - Static method in class com.simiacryptus.util.StreamNanoHTTPD: Async handler function.
AsyncListIterator<T> - Class in com.simiacryptus.util.io: Created by Andrew Charneski on 3/11/2017.
AsyncListIterator(List<T>, Thread) - Constructor for class com.simiacryptus.util.io.AsyncListIterator: Instantiates a new Async list iterator.
AsyncOutputStream - Class in com.simiacryptus.util.io: The type Async output stream.
AsyncOutputStream(OutputStream) - Constructor for class com.simiacryptus.util.io.AsyncOutputStream: Instantiates a new Async output stream.
available() - Method in class com.simiacryptus.util.io.TeeInputStream
availible() - Method in class com.simiacryptus.util.binary.BitInputStream: Availible int.
AwsUtil - Class in com.simiacryptus.util.io: The type Aws util.
AwsUtil() - Constructor for class com.simiacryptus.util.io.AwsUtil

B

BinaryChunkIterator - Class in com.simiacryptus.util.io: The type Binary chunk iterator.
BinaryChunkIterator(DataInputStream, int) - Constructor for class com.simiacryptus.util.io.BinaryChunkIterator: Instantiates a new Binary chunk iterator.
binaryStream(String, String, int, int) - Static method in class com.simiacryptus.util.Util: Binary stream stream.
bitDepth - Variable in class com.simiacryptus.util.binary.bitset.BitsCollection: The Bit depth.
BitInputStream - Class in com.simiacryptus.util.binary: The type Bit input stream.
BitInputStream(InputStream) - Constructor for class com.simiacryptus.util.binary.BitInputStream: Instantiates a new Bit input stream.
bitLength - Variable in class com.simiacryptus.util.binary.Bits: The Bit length.
BitOutputStream - Class in com.simiacryptus.util.binary: The type Bit output stream.
BitOutputStream(OutputStream) - Constructor for class com.simiacryptus.util.binary.BitOutputStream: Instantiates a new Bit output stream.
Bits - Class in com.simiacryptus.util.binary: The type Bits.
Bits(byte...) - Constructor for class com.simiacryptus.util.binary.Bits: Instantiates a new Bits.
Bits(byte[], int) - Constructor for class com.simiacryptus.util.binary.Bits: Instantiates a new Bits.
Bits(long) - Constructor for class com.simiacryptus.util.binary.Bits: Instantiates a new Bits.
Bits(long, int) - Constructor for class com.simiacryptus.util.binary.Bits: Instantiates a new Bits.
Bits(Random, int) - Constructor for class com.simiacryptus.util.binary.Bits: Instantiates a new Bits.
BitsCollection<C extends Map<Bits,AtomicInteger>> - Class in com.simiacryptus.util.binary.bitset: The type Bits collection.
BitsCollection(C) - Constructor for class com.simiacryptus.util.binary.bitset.BitsCollection: Instantiates a new Bits collection.
BitsCollection(int, C) - Constructor for class com.simiacryptus.util.binary.bitset.BitsCollection: Instantiates a new Bits collection.
BitsCollection.CodeType - Enum in com.simiacryptus.util.binary.bitset: The enum Code type.
bitwiseAnd(Bits) - Method in class com.simiacryptus.util.binary.Bits: Bitwise and bits.
bitwiseOr(Bits) - Method in class com.simiacryptus.util.binary.Bits: Bitwise or bits.
bitwiseXor(Bits) - Method in class com.simiacryptus.util.binary.Bits: Bitwise xor bits.
Bounds(double[], double[]) - Constructor for class com.simiacryptus.util.data.DensityTree.Bounds: Instantiates a new Bounds.
bounds - Variable in class com.simiacryptus.util.data.DensityTree.Node: The Bounds.
BranchCounts(Bits, long) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: Instantiates a new Branch counts.
BranchCounts(Bits, long, long, long, long) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: Instantiates a new Branch counts.
branches - Variable in class com.simiacryptus.util.io.TeeOutputStream: The Branches.

C

cache(File, Class<T>, Supplier<T>) - Static method in class com.simiacryptus.util.io.JsonUtil: Cache t.
cache(Function<F, T>) - Static method in class com.simiacryptus.util.Util: Cache function.
cache(String, String) - Static method in class com.simiacryptus.util.Util: Cache input stream.
CachedSupplier<T> - Class in com.simiacryptus.util.function: The type Cached supplier.
CachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.CachedSupplier: Instantiates a new Cached supplier.
cacheFile(String, String) - Static method in class com.simiacryptus.util.Util: Cache file file.
cacheFile(URI) - Static method in class com.simiacryptus.util.Util: Cache file file.
cacheStream(String, String) - Static method in class com.simiacryptus.util.Util: Cache input stream.
cacheStream(URI) - Static method in class com.simiacryptus.util.Util: Cache input stream.
calcNumberStats() - Method in class com.simiacryptus.util.TableOutput: Calc number stats table output.
clear() - Method in class com.simiacryptus.util.data.PercentileStatistics
clear() - Method in class com.simiacryptus.util.data.ScalarStatistics: Clear.
clear() - Method in class com.simiacryptus.util.data.SerialArrayList: Clear.
clear() - Method in class com.simiacryptus.util.io.DataLoader: Clear.
clear() - Method in class com.simiacryptus.util.TableOutput: Clear.
clearConstants() - Method in class com.simiacryptus.util.MonitoredObject: Clear constants monitored object.
close() - Method in class com.simiacryptus.util.binary.BitInputStream: Close.
close() - Method in class com.simiacryptus.util.binary.BitOutputStream
close() - Method in class com.simiacryptus.util.io.AsyncOutputStream
close() - Method in class com.simiacryptus.util.io.GifSequenceWriter: Close this GifSequenceWriter object.
close() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
close() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
close() - Method in class com.simiacryptus.util.io.NullNotebookOutput
close() - Method in class com.simiacryptus.util.io.TeeInputStream
close() - Method in class com.simiacryptus.util.io.TeeOutputStream
code() - Method in class com.simiacryptus.util.data.DensityTree.Node: Code string.
code(UncheckedSupplier<T>, int, int) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
code(UncheckedSupplier<T>, int, int) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
code(Runnable) - Method in interface com.simiacryptus.util.io.NotebookOutput: Code.
code(UncheckedSupplier<T>) - Method in interface com.simiacryptus.util.io.NotebookOutput: Code t.
code(UncheckedSupplier<T>, int, int) - Method in interface com.simiacryptus.util.io.NotebookOutput: Code t.
code(UncheckedSupplier<T>, int, int) - Method in class com.simiacryptus.util.io.NullNotebookOutput
codeSize() - Method in class com.simiacryptus.util.binary.codes.HammingCode: Code size int.
CodeUtil - Class in com.simiacryptus.util.lang: The type Code util.
CodeUtil() - Constructor for class com.simiacryptus.util.lang.CodeUtil
COLLECTOR - Static variable in class com.simiacryptus.util.data.DoubleStatistics: The Collector.
com.simiacryptus.util - package com.simiacryptus.util
com.simiacryptus.util.binary - package com.simiacryptus.util.binary
com.simiacryptus.util.binary.bitset - package com.simiacryptus.util.binary.bitset
com.simiacryptus.util.binary.codes - package com.simiacryptus.util.binary.codes
com.simiacryptus.util.data - package com.simiacryptus.util.data
com.simiacryptus.util.function - package com.simiacryptus.util.function
com.simiacryptus.util.io - package com.simiacryptus.util.io
com.simiacryptus.util.lang - package com.simiacryptus.util.lang
com.simiacryptus.util.test - package com.simiacryptus.util.test
combine(DoubleStatistics) - Method in class com.simiacryptus.util.data.DoubleStatistics: Combine double statistics.
compareTo(Bits) - Method in class com.simiacryptus.util.binary.Bits
compareTo(HammingSymbol<T>) - Method in class com.simiacryptus.util.binary.codes.HammingSymbol
computeSums() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Compute sums tree apply.
concat(Consumer<NotebookOutput>, Consumer<NotebookOutput>) - Static method in interface com.simiacryptus.util.io.NotebookOutput: Concat consumer.
concatenate(Bits) - Method in class com.simiacryptus.util.binary.Bits: Concatenate bits.
copy() - Method in class com.simiacryptus.util.data.SerialArrayList: Copy serial array list.
count - Variable in class com.simiacryptus.util.binary.codes.HammingSymbol: The Count.
count(T) - Method in class com.simiacryptus.util.CountCollection: Count int.
CountCollection<T,C extends Map<T,AtomicInteger>> - Class in com.simiacryptus.util: The type Count collection.
CountCollection(C) - Constructor for class com.simiacryptus.util.CountCollection: Instantiates a new Count collection.
CountTreeBitsCollection - Class in com.simiacryptus.util.binary.bitset: The type Count tree bits collection.
CountTreeBitsCollection() - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection(BitInputStream) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection(BitInputStream, int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection(byte[]) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection(byte[], int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection(int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Instantiates a new Count tree bits collection.
CountTreeBitsCollection.BranchCounts - Class in com.simiacryptus.util.binary.bitset: The type Branch counts.
CountTreeBitsCollection.SerializationChecks - Enum in com.simiacryptus.util.binary.bitset: The enum Serialization checks.
create(int, File, String) - Static method in class com.simiacryptus.util.FileNanoHTTPD: Create output stream.
create(File) - Static method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Create html notebook output.
create() - Method in class com.simiacryptus.util.lang.ResourcePool: Create t.
create(Map<CharSequence, Object>...) - Static method in class com.simiacryptus.util.TableOutput: Create table output.
currentHandler() - Method in class com.simiacryptus.util.test.SysOutInterceptor: Current handler printGroups stream.
currentStack() - Static method in class com.simiacryptus.util.Util: Current stack string [ ].
cvt(TimeUnit) - Static method in class com.simiacryptus.util.Util: Cvt temporal unit.

D

d(String, Object...) - Static method in class com.simiacryptus.util.lang.LOG: D.
d(Throwable, CharSequence, Object...) - Static method in class com.simiacryptus.util.lang.LOG: D.
data - Variable in class com.simiacryptus.util.data.IntArray: The Data.
data - Variable in class com.simiacryptus.util.test.LabeledObject: The Data.
dataCompare(Bits, Bits) - Static method in class com.simiacryptus.util.binary.Bits: Data compare int.
DataLoader<T> - Class in com.simiacryptus.util.io: The type Data loader.
DataLoader() - Constructor for class com.simiacryptus.util.io.DataLoader
dataReciever - Variable in class com.simiacryptus.util.StreamNanoHTTPD: The Data reciever.
dateStr(String) - Static method in class com.simiacryptus.util.Util: Date str string.
decode(BitInputStream, long) - Method in class com.simiacryptus.util.binary.codes.Gaussian: Decode long.
decode(BitInputStream) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Decode t.
decode(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Decode entry.
DEFAULT_ROOT - Static variable in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

The constant DEFAULT_ROOT.
DensityTree - Class in com.simiacryptus.util.data: The type Density tree.
DensityTree(CharSequence...) - Constructor for class com.simiacryptus.util.data.DensityTree: Instantiates a new Density tree.
DensityTree.Bounds - Class in com.simiacryptus.util.data: The type Bounds.
DensityTree.Node - Class in com.simiacryptus.util.data: The type Node.
DensityTree.OrthoRule - Class in com.simiacryptus.util.data: The type Ortho rule.
DensityTree.Rule - Class in com.simiacryptus.util.data: The type Rule.
divide(long, long, long) - Static method in class com.simiacryptus.util.binary.Bits: Divide bits.
dot(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Dot double.
dot(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil: Dot double.
DoubleStatistics - Class in com.simiacryptus.util.data: From: http://stackoverflow.com/questions/36263352/java-streams-standard-deviation Author: Tunaki
DoubleStatistics() - Constructor for class com.simiacryptus.util.data.DoubleStatistics

E

encode(BitOutputStream, long, long) - Method in class com.simiacryptus.util.binary.codes.Gaussian: Encode.
encode(T) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Encode bits.
end() - Method in class com.simiacryptus.util.binary.Interval: End long.
equals(Object) - Method in class com.simiacryptus.util.binary.Bits
equals(Object) - Method in class com.simiacryptus.util.data.IntArray
equals(Object) - Method in class com.simiacryptus.util.data.SerialArrayList
eval(double[]) - Method in class com.simiacryptus.util.data.DensityTree.OrthoRule
eval(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Rule: Eval boolean.
expect(Enum<T>) - Method in class com.simiacryptus.util.binary.BitInputStream: Expect.
expect(Bits) - Method in class com.simiacryptus.util.binary.BitInputStream: Expect.

F

FairAsyncWorkQueue - Class in com.simiacryptus.util.io: The type Fair async work queue.
FairAsyncWorkQueue() - Constructor for class com.simiacryptus.util.io.FairAsyncWorkQueue
FastRandom - Class in com.simiacryptus.util: The type Fast randomize.
FastRandom() - Constructor for class com.simiacryptus.util.FastRandom: Instantiates a new Fast random.
FastRandom(long) - Constructor for class com.simiacryptus.util.FastRandom: Instantiates a new Fast random.
file(CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
file(CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
file(byte[], CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
file(CharSequence, CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
file(CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
file(CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
file(byte[], CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
file(CharSequence, CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
file(CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: File output stream.
file(CharSequence, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: File string.
file(byte[], CharSequence, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: File string.
file(CharSequence, CharSequence, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: File string.
file(CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
file(CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
file(byte[], CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
file(CharSequence, CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
FileNanoHTTPD - Class in com.simiacryptus.util: The type File nano httpd.
FileNanoHTTPD(File, int) - Constructor for class com.simiacryptus.util.FileNanoHTTPD: Instantiates a new File nano httpd.
finalize() - Method in class com.simiacryptus.util.io.AsyncListIterator
findFile(Class<?>) - Static method in class com.simiacryptus.util.lang.CodeUtil: Find file file.
findFile(StackTraceElement) - Static method in class com.simiacryptus.util.lang.CodeUtil: Find file file.
findFile(String) - Static method in class com.simiacryptus.util.lang.CodeUtil: Find file file.
fitness - Variable in class com.simiacryptus.util.data.DensityTree.Rule: The Fitness.
flush() - Method in class com.simiacryptus.util.binary.BitOutputStream: Flush.
flush() - Method in class com.simiacryptus.util.io.AsyncOutputStream
flush() - Method in class com.simiacryptus.util.io.TeeOutputStream
format(CharSequence, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Format string.
forwardIndex - Variable in class com.simiacryptus.util.binary.codes.HammingCode: The Forward index.
fromBinomial(double, long) - Static method in class com.simiacryptus.util.binary.codes.Gaussian: From binomial gaussian.

G

gatewayUri - Variable in class com.simiacryptus.util.StreamNanoHTTPD: The Gateway uri.
Gaussian - Class in com.simiacryptus.util.binary.codes: The type Gaussian.
Gaussian(double, double) - Constructor for class com.simiacryptus.util.binary.codes.Gaussian: Instantiates a new Gaussian.
gc_seconds() - Method in class com.simiacryptus.util.lang.TimedResult: Gc seconds double.
gcMs - Variable in class com.simiacryptus.util.lang.TimedResult: The Gc ms.
get(int) - Method in class com.simiacryptus.util.data.IntArray: Get int.
get(int) - Method in class com.simiacryptus.util.data.SerialArrayList: Get u.
get() - Method in class com.simiacryptus.util.function.CachedSupplier
get() - Method in class com.simiacryptus.util.function.SoftCachedSupplier
get() - Method in class com.simiacryptus.util.function.WeakCachedSupplier
get(boolean) - Static method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Get markdown notebook output.
get(Object, boolean) - Static method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Get markdown notebook output.
get() - Method in class com.simiacryptus.util.lang.ResourcePool: Get t.
get(Predicate<T>) - Method in class com.simiacryptus.util.lang.ResourcePool: Get t.
get() - Method in class com.simiacryptus.util.lang.SupplierWeakCache
get() - Method in interface com.simiacryptus.util.lang.UncheckedRunnable: Gets a result.
get() - Method in interface com.simiacryptus.util.lang.UncheckedSupplier: Gets a result.
get(String) - Static method in class com.simiacryptus.util.Util: Get input stream.
getAll() - Method in class com.simiacryptus.util.lang.StaticResourcePool: Gets all.
getBounds(double[][]) - Method in class com.simiacryptus.util.data.DensityTree: Gets bounds.
getBytes() - Method in class com.simiacryptus.util.binary.Bits: Get bytes byte [ ].
getCodes(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Gets codes.
getColumnNames() - Method in class com.simiacryptus.util.data.DensityTree: Get column names string [ ].
getCount() - Method in class com.simiacryptus.util.data.ScalarStatistics: Gets count.
getDepth() - Method in class com.simiacryptus.util.data.DensityTree.Node: Gets depth.
getDoubleArray(JsonArray) - Static method in class com.simiacryptus.util.io.JsonUtil: Get double array double [ ].
getExceptionString(Throwable) - Static method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Gets exception string.
getFirst() - Method in class com.simiacryptus.util.lang.Tuple2: Gets first.
getFrontMatterProperty(CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
getFrontMatterProperty(CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
getFrontMatterProperty(CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: Gets front matter property.
getFrontMatterProperty(CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
getGitBase() - Static method in class com.simiacryptus.util.lang.CodeUtil
getHttpd() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
getHttpd() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
getHttpd() - Method in interface com.simiacryptus.util.io.NotebookOutput: Gets httpd.
getHttpd() - Method in class com.simiacryptus.util.io.NullNotebookOutput
getIndent(CharSequence) - Static method in class com.simiacryptus.util.lang.CodeUtil: Gets indent.
getInner() - Method in class com.simiacryptus.util.test.SysOutInterceptor: Gets heapCopy.
getInnerText(StackTraceElement) - Static method in class com.simiacryptus.util.lang.CodeUtil: Gets heapCopy text.
getIntArray(JsonArray) - Static method in class com.simiacryptus.util.io.JsonUtil: Get int array int [ ].
getJavadoc(Class<?>) - Static method in class com.simiacryptus.util.lang.CodeUtil: Gets javadoc.
getJson() - Method in class com.simiacryptus.util.data.ScalarStatistics: Gets json.
getJson(double[]) - Static method in class com.simiacryptus.util.io.JsonUtil: Gets json.
getJson(int[]) - Static method in class com.simiacryptus.util.io.JsonUtil: Gets json.
getLast(Stream<T>) - Static method in class com.simiacryptus.util.Util: Gets last.
getLeft() - Method in class com.simiacryptus.util.data.DensityTree.Node: Gets left.
getList() - Method in class com.simiacryptus.util.CountCollection: Gets list.
getMap() - Method in class com.simiacryptus.util.CountCollection: Gets map.
getMapper() - Static method in class com.simiacryptus.util.io.JsonUtil: Gets mapper.
getMaxDepth() - Method in class com.simiacryptus.util.data.DensityTree: Gets max depth.
getMaxImageSize() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
getMaxImageSize() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
getMaxOutSize() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
getMaxOutSize() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
getMaxOutSize() - Method in interface com.simiacryptus.util.io.NotebookOutput: Gets max out size.
getMaxOutSize() - Method in class com.simiacryptus.util.io.NullNotebookOutput
getMean() - Method in class com.simiacryptus.util.data.ScalarStatistics: Gets mean.
getMeanPower() - Method in class com.simiacryptus.util.data.ScalarStatistics: Gets mean power.
getMemorySize() - Method in class com.simiacryptus.util.data.SerialArrayList: Gets memory size.
getMetrics() - Method in class com.simiacryptus.util.data.PercentileStatistics
getMetrics() - Method in class com.simiacryptus.util.data.ScalarStatistics
getMetrics() - Method in interface com.simiacryptus.util.MonitoredItem: Gets metrics.
getMetrics() - Method in class com.simiacryptus.util.MonitoredObject
getMinFitness() - Method in class com.simiacryptus.util.data.DensityTree: Gets min fitness.
getMinSplitFract() - Method in class com.simiacryptus.util.data.DensityTree: Gets min split fract.
getName() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
getName() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
getName() - Method in interface com.simiacryptus.util.io.NotebookOutput: Gets name.
getName() - Method in class com.simiacryptus.util.io.NullNotebookOutput
getPercentile(double) - Method in class com.simiacryptus.util.data.PercentileStatistics: Gets percentile.
getResourceDir() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Gets resource dir.
getResourceDir() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Gets resource dir.
getResourceDir() - Method in interface com.simiacryptus.util.io.NotebookOutput: Gets resource dir.
getResourceDir() - Method in class com.simiacryptus.util.io.NullNotebookOutput
getRight() - Method in class com.simiacryptus.util.data.DensityTree.Node: Gets right.
getRoot() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Gets root.
getRule() - Method in class com.simiacryptus.util.data.DensityTree.Node: Gets rule.
getSecond() - Method in class com.simiacryptus.util.lang.Tuple2: Gets second.
getSetEncoder() - Method in class com.simiacryptus.util.binary.codes.HammingCode: Gets set encoder.
getSetEncoder(BitInputStream) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Gets set encoder.
getSetEncoder(byte[]) - Method in class com.simiacryptus.util.binary.codes.HammingCode: Gets set encoder.
getSize() - Method in interface com.simiacryptus.util.data.SerialType: Gets size.
getSoftRef() - Method in class com.simiacryptus.util.function.WeakCachedSupplier: Gets soft ref.
getSourceRoot() - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Gets source root.
getSplitSizeThreshold() - Method in class com.simiacryptus.util.data.DensityTree: Gets split size threshold.
getStandardDeviation() - Method in class com.simiacryptus.util.data.DoubleStatistics: Gets standard deviation.
getStdDev() - Method in class com.simiacryptus.util.data.ScalarStatistics: Gets std dev.
getSumOfSquare() - Method in class com.simiacryptus.util.data.DoubleStatistics: Gets sum of square.
getTotalBitsWritten() - Method in class com.simiacryptus.util.binary.BitOutputStream: Gets total bits written.
getType(Bits) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection: Gets type.
getType(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection
getVolume() - Method in class com.simiacryptus.util.data.DensityTree.Bounds: Gets volume.
getWeights() - Method in class com.simiacryptus.util.binary.codes.HammingCode: Gets weights.
GifSequenceWriter - Class in com.simiacryptus.util.io: The type Gif sequence writer.
GifSequenceWriter(ImageOutputStream, int, int, boolean) - Constructor for class com.simiacryptus.util.io.GifSequenceWriter: Creates a new GifSequenceWriter
gifWriter - Variable in class com.simiacryptus.util.io.GifSequenceWriter: The Gif writer.

H

h1(CharSequence, Object...) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
h1(CharSequence, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
h1(CharSequence, Object...) - Method in interface com.simiacryptus.util.io.NotebookOutput: H 1.
h1(CharSequence, Object...) - Method in class com.simiacryptus.util.io.NullNotebookOutput
h2(CharSequence, Object...) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
h2(CharSequence, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
h2(CharSequence, Object...) - Method in interface com.simiacryptus.util.io.NotebookOutput: H 2.
h2(CharSequence, Object...) - Method in class com.simiacryptus.util.io.NullNotebookOutput
h3(CharSequence, Object...) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
h3(CharSequence, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
h3(CharSequence, Object...) - Method in interface com.simiacryptus.util.io.NotebookOutput: H 3.
h3(CharSequence, Object...) - Method in class com.simiacryptus.util.io.NullNotebookOutput
HammingCode<T extends Comparable<T>> - Class in com.simiacryptus.util.binary.codes: The type Hamming code.
HammingCode(Collection<HammingSymbol<T>>) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode: Instantiates a new Hamming code.
HammingCode.HammingCodeCollection - Class in com.simiacryptus.util.binary.codes: The type Hamming code collection.
HammingCodeCollection() - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection: Instantiates a new Hamming code collection.
HammingCodeCollection(BitInputStream) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection: Instantiates a new Hamming code collection.
HammingCodeCollection(byte[]) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection: Instantiates a new Hamming code collection.
HammingSymbol<T extends Comparable<T>> - Class in com.simiacryptus.util.binary.codes: The type Hamming symbol.
HammingSymbol(int, T) - Constructor for class com.simiacryptus.util.binary.codes.HammingSymbol: Instantiates a new Hamming symbol.
handler(ExecutorService, String, Consumer<OutputStream>) - Static method in class com.simiacryptus.util.FileNanoHTTPD: Sync handler function.
handlers - Variable in class com.simiacryptus.util.FileNanoHTTPD: The Custom handlers.
hashCode() - Method in class com.simiacryptus.util.binary.Bits
hashCode() - Method in class com.simiacryptus.util.data.IntArray
hashCode() - Method in class com.simiacryptus.util.data.SerialArrayList
hasNext() - Method in class com.simiacryptus.util.io.AsyncListIterator
hasNext() - Method in class com.simiacryptus.util.io.BinaryChunkIterator
highestOneBit(long) - Static method in class com.simiacryptus.util.binary.Bits: Highest one bit byte.
HtmlNotebookOutput - Class in com.simiacryptus.util.io: Deprecated.
HtmlNotebookOutput(File, OutputStream) - Constructor for class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Instantiates a new Html notebook output.

I

image(BufferedImage, CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
image(BufferedImage, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
image(BufferedImage, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: Image string.
image(BufferedImage, CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
imageMetaData - Variable in class com.simiacryptus.util.io.GifSequenceWriter: The Image meta data.
imageWriteParam - Variable in class com.simiacryptus.util.io.GifSequenceWriter: The Image getCudaPtr param.
init() - Method in class com.simiacryptus.util.FileNanoHTTPD: Init stream nano httpd.
init() - Method in class com.simiacryptus.util.StreamNanoHTTPD
init() - Method in class com.simiacryptus.util.test.SysOutInterceptor: Init sys out interceptor.
INSTANCE - Static variable in class com.simiacryptus.util.FastRandom: The constant INSTANCE.
INSTANCE - Static variable in class com.simiacryptus.util.test.SysOutInterceptor: The constant INSTANCE.
IntArray - Class in com.simiacryptus.util.data: The type Int array.
IntArray(int[]) - Constructor for class com.simiacryptus.util.data.IntArray: Instantiates a new Int array.
Interval - Class in com.simiacryptus.util.binary: The type Interval.
Interval(long, long, long) - Constructor for class com.simiacryptus.util.binary.Interval: Instantiates a new Interval.
IOUtil - Class in com.simiacryptus.util.io: The type Io util.
IOUtil() - Constructor for class com.simiacryptus.util.io.IOUtil
isAutobrowse() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
isAutobrowse() - Method in class com.simiacryptus.util.StreamNanoHTTPD
isChainCloses() - Method in class com.simiacryptus.util.io.TeeOutputStream: Is chain closes boolean.
isNull(T, T) - Static method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Is null t.
isPrefixFreeCode(Set<Bits>) - Static method in class com.simiacryptus.util.binary.codes.HammingCode: Is prefix free code boolean.

J

JsonFormattable - Interface in com.simiacryptus.util.lang: The interface Json formattable.
JsonUtil - Class in com.simiacryptus.util.io: The type Json util.
JsonUtil() - Constructor for class com.simiacryptus.util.io.JsonUtil

K

key - Variable in class com.simiacryptus.util.binary.codes.HammingSymbol: The Key.
kryo() - Static method in class com.simiacryptus.util.io.KryoUtil: Kryo kryo.
KryoUtil - Class in com.simiacryptus.util.io: The type Kryo util.
KryoUtil() - Constructor for class com.simiacryptus.util.io.KryoUtil

L

label - Variable in class com.simiacryptus.util.test.LabeledObject: The Label.
LabeledObject<T> - Class in com.simiacryptus.util.test: The type Labeled object.
LabeledObject(T, String) - Constructor for class com.simiacryptus.util.test.LabeledObject: Instantiates a new Labeled object.
layout(Component) - Static method in class com.simiacryptus.util.Util: Layout.
leftShift(int) - Method in class com.simiacryptus.util.binary.Bits: Left shift bits.
length - Variable in class com.simiacryptus.util.binary.Interval: The Length.
length() - Method in class com.simiacryptus.util.data.SerialArrayList: Length int.
link(File, CharSequence) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
link(File, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
link(File, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: Link string.
link(File, CharSequence) - Method in class com.simiacryptus.util.io.NullNotebookOutput
LOG - Class in com.simiacryptus.util.lang: The type Log.
LOG() - Constructor for class com.simiacryptus.util.lang.LOG
log - Variable in class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult: The Log.
LOG.Severity - Enum in com.simiacryptus.util.lang: The enum Severity.
LOG2 - Static variable in class com.simiacryptus.util.binary.codes.Gaussian: The constant LOG2.
log2(double) - Static method in class com.simiacryptus.util.binary.codes.Gaussian: Log 2 double.
LoggedResult(T, String) - Constructor for class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult: Instantiates a new Logged result.

M

magnitude(double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Magnitude double.
map - Variable in class com.simiacryptus.util.CountCollection: The Map.
map(Function<T, U>) - Method in class com.simiacryptus.util.test.LabeledObject: Map labeled object.
MarkdownNotebookOutput - Class in com.simiacryptus.util.io: The type Markdown notebook output.
MarkdownNotebookOutput(File, String, boolean) - Constructor for class com.simiacryptus.util.io.MarkdownNotebookOutput: Instantiates a new Markdown notebook output.
MarkdownNotebookOutput(File, String, int, boolean) - Constructor for class com.simiacryptus.util.io.MarkdownNotebookOutput: Instantiates a new Markdown notebook output.
max - Variable in class com.simiacryptus.util.binary.Interval: The Max.
max - Variable in class com.simiacryptus.util.data.DensityTree.Bounds: The Max.
MAX_OUTPUT - Static variable in class com.simiacryptus.util.io.MarkdownNotebookOutput: The constant MAX_OUTPUT.
maximumSize(BufferedImage, int) - Static method in class com.simiacryptus.util.Util: Resize buffered image.
mean(double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Mean double.
mean - Variable in class com.simiacryptus.util.binary.codes.Gaussian: The Mean.
min - Variable in class com.simiacryptus.util.data.DensityTree.Bounds: The Min.
minus(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil: Minus list.
mkString(CharSequence, CharSequence...) - Static method in class com.simiacryptus.util.Util: Mk string string.
MonitoredItem - Interface in com.simiacryptus.util: The interface Monitored item.
MonitoredObject - Class in com.simiacryptus.util: The type Monitored object.
MonitoredObject() - Constructor for class com.simiacryptus.util.MonitoredObject
multiply(double[], double) - Static method in class com.simiacryptus.util.ArrayUtil: Multiply double [ ].
multiply(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Multiply double [ ].
multiply(List<double[]>, double) - Static method in class com.simiacryptus.util.ArrayUtil: Multiply list.
multiply(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil: Multiply list.

N

name - Variable in class com.simiacryptus.util.data.DensityTree.Rule: The Name.
newInputStream() - Method in class com.simiacryptus.util.io.TeeOutputStream: New input stream piped input stream.
newList() - Method in interface com.simiacryptus.util.data.SerialType: New list serial array list.
newList(int) - Method in interface com.simiacryptus.util.data.SerialType: New list serial array list.
newList(T...) - Method in interface com.simiacryptus.util.data.SerialType: New list serial array list.
next() - Method in class com.simiacryptus.util.binary.Bits: Returns the next binary string which is of the same length but incremented by one.
next() - Method in class com.simiacryptus.util.FastRandom: Next long.
next() - Method in class com.simiacryptus.util.io.AsyncListIterator
next() - Method in class com.simiacryptus.util.io.BinaryChunkIterator
Node(double[][]) - Constructor for class com.simiacryptus.util.data.DensityTree.Node: Instantiates a new Node.
Node(double[][], int) - Constructor for class com.simiacryptus.util.data.DensityTree.Node: Instantiates a new Node.
NotebookOutput - Interface in com.simiacryptus.util.io: The interface Notebook output.
NotImplementedException - Exception in com.simiacryptus.util.lang: The type Not implemented exception.
NotImplementedException() - Constructor for exception com.simiacryptus.util.lang.NotImplementedException: Deprecated.
NotImplementedException(String) - Constructor for exception com.simiacryptus.util.lang.NotImplementedException: Deprecated.
NULL - Static variable in class com.simiacryptus.util.binary.Bits: The constant NULL.
NullNotebookOutput - Class in com.simiacryptus.util.io: The type Null notebook output.
NullNotebookOutput(String) - Constructor for class com.simiacryptus.util.io.NullNotebookOutput: Instantiates a new Null notebook output.
NullNotebookOutput() - Constructor for class com.simiacryptus.util.io.NullNotebookOutput: Instantiates a new Null notebook output.
NUMBERS - Static variable in class com.simiacryptus.util.data.DoubleStatistics: The Numbers.

O

obj - Variable in class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult: The Obj.
onComplete(Consumer<File>...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: On complete markdown notebook output.
ONE - Static variable in class com.simiacryptus.util.binary.Bits: The constant ONE.
oneCount - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: The One count.
op(double[], double[], DoubleBinaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil: Op double [ ].
op(double[], DoubleUnaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil: Op double [ ].
op(List<double[]>, DoubleUnaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil: Op list.
op(List<double[]>, List<double[]>, DoubleBinaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil: Op list.
ORIGINAL_OUT - Static variable in class com.simiacryptus.util.test.SysOutInterceptor: The constant INSTANCE.
OrthoRule(int, double) - Constructor for class com.simiacryptus.util.data.DensityTree.OrthoRule: Instantiates a new Ortho rule.
out(String, Object...) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
out(String, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
out(UncheckedSupplier<T>) - Method in interface com.simiacryptus.util.io.NotebookOutput: Code t.
out(String, Object...) - Method in interface com.simiacryptus.util.io.NotebookOutput: Out.

P

p(CharSequence, Object...) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
p(CharSequence, Object...) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
p(CharSequence, Object...) - Method in interface com.simiacryptus.util.io.NotebookOutput: P.
p(CharSequence, Object...) - Method in class com.simiacryptus.util.io.NullNotebookOutput
padLeftBytes(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits: Pad left bytes byte [ ].
padRight(int) - Method in class com.simiacryptus.util.binary.Bits: Pad right bits.
path - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: The Path.
pathTo(File, File) - Static method in class com.simiacryptus.util.Util: Path to string.
pathToCodeFile(File, File) - Static method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Path to code file path.
pathToGitResource(File) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
pathToReportResource(File) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Code file string.
peek(int) - Method in class com.simiacryptus.util.binary.BitInputStream: Peek bits.
peekIntCoord(int) - Method in class com.simiacryptus.util.binary.BitInputStream: Peek int coord int.
peekLongCoord(long) - Method in class com.simiacryptus.util.binary.BitInputStream: Peek long coord long.
PercentileStatistics - Class in com.simiacryptus.util.data: The type Percentile statistics.
PercentileStatistics() - Constructor for class com.simiacryptus.util.data.PercentileStatistics
points - Variable in class com.simiacryptus.util.data.DensityTree.Node: The Points.
pool - Variable in class com.simiacryptus.util.FileNanoHTTPD: The Pool.
predict(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Node: Predict int.
primary - Variable in class com.simiacryptus.util.io.TeeOutputStream: The Primary.
print(String) - Method in class com.simiacryptus.util.test.SysOutInterceptor
println(String) - Method in class com.simiacryptus.util.test.SysOutInterceptor
projectRoot - Static variable in class com.simiacryptus.util.lang.CodeUtil: The constant projectRoot.
putAll(Collection, int) - Method in class com.simiacryptus.util.data.SerialArrayList: Put all.
putAll(SerialArrayList, int) - Method in class com.simiacryptus.util.data.SerialArrayList: Put all.
putRow(Map<CharSequence, Object>) - Method in class com.simiacryptus.util.TableOutput: Put row.

R

R - Static variable in class com.simiacryptus.util.Util: The constant R.
random() - Method in class com.simiacryptus.util.FastRandom: Random double.
range(int) - Method in class com.simiacryptus.util.binary.Bits: Range bits.
range(int, int) - Method in class com.simiacryptus.util.binary.Bits: Range bits.
read(int) - Method in class com.simiacryptus.util.binary.BitInputStream: Read bits.
read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection: Read.
read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection
read(BitInputStream, int) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Read.
read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection
read(ByteBuffer) - Method in interface com.simiacryptus.util.data.SerialType: Read t.
read(byte[]) - Method in interface com.simiacryptus.util.data.SerialType: Read t.
read(List<T>) - Method in class com.simiacryptus.util.io.DataLoader: Read.
read() - Method in class com.simiacryptus.util.io.TeeInputStream
read(byte[]) - Method in class com.simiacryptus.util.io.TeeInputStream
read(byte[], int, int) - Method in class com.simiacryptus.util.io.TeeInputStream
read(DataInputStream, int) - Static method in class com.simiacryptus.util.Util: Read byte [ ].
readAhead() - Method in class com.simiacryptus.util.binary.BitInputStream: Read ahead bits.
readAhead(int) - Method in class com.simiacryptus.util.binary.BitInputStream: Read ahead bits.
readBool() - Method in class com.simiacryptus.util.binary.BitInputStream: Read bool boolean.
readBoundedLong(long) - Method in class com.simiacryptus.util.binary.BitInputStream: Reads a single positive bounded integral value (up to 64-bit, including 0, excluding max)
readBranchCounts(BitInputStream, Bits, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Read branch counts branch counts.
readChar() - Method in class com.simiacryptus.util.binary.BitInputStream: Read char char.
readJson(JsonObject) - Method in class com.simiacryptus.util.data.ScalarStatistics: Read json.
readJson(File) - Static method in class com.simiacryptus.util.io.IOUtil: Read json t.
readKryo(File) - Static method in class com.simiacryptus.util.io.IOUtil: Read kryo t.
readTerminalCount(BitInputStream, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Read terminal count long.
readVarLong() - Method in class com.simiacryptus.util.binary.BitInputStream: Read var long long.
readVarShort() - Method in class com.simiacryptus.util.binary.BitInputStream: Read var short short.
readVarShort(int) - Method in class com.simiacryptus.util.binary.BitInputStream: Read var short short.
readZeroBranchSize(BitInputStream, long, Bits) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Read zero branch size long.
Report() - Constructor for class com.simiacryptus.util.test.TestCategories.Report
report(Stream<CharSequence>) - Static method in class com.simiacryptus.util.Util: Report.
report(CharSequence...) - Static method in class com.simiacryptus.util.Util: Report.
ResearchCode() - Constructor for class com.simiacryptus.util.test.TestCategories.ResearchCode
ResourcePool<T> - Class in com.simiacryptus.util.lang: The type Resource pool.
ResourcePool(int) - Constructor for class com.simiacryptus.util.lang.ResourcePool: Instantiates a new Resource pool.
result - Variable in class com.simiacryptus.util.lang.TimedResult: The Obj.
reverseIndex - Variable in class com.simiacryptus.util.binary.codes.HammingCode: The Reverse index.
rows - Variable in class com.simiacryptus.util.TableOutput: The Rows.
Rule(String) - Constructor for class com.simiacryptus.util.data.DensityTree.Rule: Instantiates a new Rule.
run() - Method in class com.simiacryptus.util.io.FairAsyncWorkQueue
run(Function<T, U>) - Method in class com.simiacryptus.util.lang.StaticResourcePool: With u.
run(Function<T, U>, Predicate<T>, boolean) - Method in class com.simiacryptus.util.lang.StaticResourcePool: With u.
RunLengthBitsCollection - Class in com.simiacryptus.util.binary.bitset: The type Run length bits collection.
RunLengthBitsCollection(int) - Constructor for class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection: Instantiates a new Run length bits collection.

S

ScalarStatistics - Class in com.simiacryptus.util.data: The type Scalar statistics.
ScalarStatistics() - Constructor for class com.simiacryptus.util.data.ScalarStatistics
schema - Variable in class com.simiacryptus.util.TableOutput: The Schema.
seconds() - Method in class com.simiacryptus.util.lang.TimedResult: Seconds double.
SerialArrayList - Class in com.simiacryptus.util.data: The type Serial array list.
SerialArrayList(SerialType, SerialArrayList...) - Constructor for class com.simiacryptus.util.data.SerialArrayList: Instantiates a new Serial array list.
SerialArrayList(SerialType, Collection) - Constructor for class com.simiacryptus.util.data.SerialArrayList: Instantiates a new Serial array list.
SerialArrayList(SerialType, U...) - Constructor for class com.simiacryptus.util.data.SerialArrayList: Instantiates a new Serial array list.
SerialArrayList(SerialType) - Constructor for class com.simiacryptus.util.data.SerialArrayList: Instantiates a new Serial array list.
SerialArrayList(SerialType, int) - Constructor for class com.simiacryptus.util.data.SerialArrayList: Instantiates a new Serial array list.
SERIALIZATION_CHECKS - Static variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: The constant SERIALIZATION_CHECKS.
SerialType<T> - Interface in com.simiacryptus.util.data: The interface Serial type.
serve(NanoHTTPD.IHTTPSession) - Method in class com.simiacryptus.util.FileNanoHTTPD
serve(NanoHTTPD.IHTTPSession) - Method in class com.simiacryptus.util.StreamNanoHTTPD
set(int, U) - Method in class com.simiacryptus.util.data.SerialArrayList: Set.
setAutobrowse(boolean) - Method in class com.simiacryptus.util.StreamNanoHTTPD
setChainCloses(boolean) - Method in class com.simiacryptus.util.io.TeeOutputStream: Sets chain closes.
setCurrentHandler(PrintStream) - Method in class com.simiacryptus.util.test.SysOutInterceptor: Sets current handler.
setFrontMatterProperty(CharSequence, CharSequence) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
setFrontMatterProperty(CharSequence, CharSequence) - Method in interface com.simiacryptus.util.io.NotebookOutput: Sets fm prop.
setLeft(DensityTree.Node) - Method in class com.simiacryptus.util.data.DensityTree.Node: Sets left.
setMaxDepth(int) - Method in class com.simiacryptus.util.data.DensityTree: Sets max depth.
setMaxImageSize(int) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
setMaxImageSize(int) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput
setMaxOutSize(int) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.
setMinFitness(double) - Method in class com.simiacryptus.util.data.DensityTree: Sets min fitness.
setMinSplitFract(double) - Method in class com.simiacryptus.util.data.DensityTree: Sets min split fract.
setRight(DensityTree.Node) - Method in class com.simiacryptus.util.data.DensityTree.Node: Sets right.
setRule(DensityTree.Rule) - Method in class com.simiacryptus.util.data.DensityTree.Node: Sets rule.
setSourceRoot(String) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Sets source root.
setSplitSizeThreshold(int) - Method in class com.simiacryptus.util.data.DensityTree: Sets split size threshold.
setUseBinomials(boolean) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Sets use binomials.
shiftLeft(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits: Shift left byte [ ].
shiftLeft(byte[], int, byte[]) - Static method in class com.simiacryptus.util.binary.Bits: Shift left.
shiftRight(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits: Shift right byte [ ].
size - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: The Size.
size() - Method in class com.simiacryptus.util.data.IntArray: Size int.
size() - Method in class com.simiacryptus.util.lang.ResourcePool: Size int.
size() - Method in class com.simiacryptus.util.lang.StaticResourcePool: Size int.
sleep(int) - Static method in class com.simiacryptus.util.Util: Sleep.
SoftCachedSupplier<T> - Class in com.simiacryptus.util.function: The type Soft cached supplier.
SoftCachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.SoftCachedSupplier: Instantiates a new Soft cached supplier.
sourceRoot - Variable in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

The Source root.
split() - Method in class com.simiacryptus.util.data.DensityTree.Node: Split.
split_ortho(int) - Method in class com.simiacryptus.util.data.DensityTree.Node: Split ortho stream.
start - Variable in class com.simiacryptus.util.binary.Interval: The Start.
startsWith(Bits) - Method in class com.simiacryptus.util.binary.Bits: Starts apply boolean.
StaticResourcePool<T> - Class in com.simiacryptus.util.lang: The type Static resource pool.
StaticResourcePool(List<T>) - Constructor for class com.simiacryptus.util.lang.StaticResourcePool: Instantiates a new Static resource pool.
stats(double[]) - Static method in class com.simiacryptus.util.data.ScalarStatistics: Stats scalar statistics.
stdDev - Variable in class com.simiacryptus.util.binary.codes.Gaussian: The Std dev.
stop() - Method in class com.simiacryptus.util.io.DataLoader: Stop.
stream() - Method in class com.simiacryptus.util.io.DataLoader: Stream stream.
StreamNanoHTTPD - Class in com.simiacryptus.util: The type Stream nano httpd.
StreamNanoHTTPD(int, String, File) - Constructor for class com.simiacryptus.util.StreamNanoHTTPD: Instantiates a new Stream nano httpd.
StreamNanoHTTPD(int) - Constructor for class com.simiacryptus.util.StreamNanoHTTPD: Instantiates a new Stream nano httpd.
submit(Runnable) - Method in class com.simiacryptus.util.io.FairAsyncWorkQueue: Submit.
subtract(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Subtract double [ ].
subtract(ScalarStatistics) - Method in class com.simiacryptus.util.data.ScalarStatistics: Subtract scalar statistics.
sum(double[]) - Static method in class com.simiacryptus.util.ArrayUtil: Sum double.
sum(double[], double) - Static method in class com.simiacryptus.util.ArrayUtil: Sum double [ ].
sum(List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil: Sum double.
sum(Collection<Long>) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Sum long.
summarize(int, String) - Method in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

Summarize string.
summarize(String, int) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Summarize string.
SupplierWeakCache<T> - Class in com.simiacryptus.util.lang: The type Supplier weak cache.
SupplierWeakCache(Supplier<T>) - Constructor for class com.simiacryptus.util.lang.SupplierWeakCache: Instantiates a new Supplier weak cache.
SysOutInterceptor - Class in com.simiacryptus.util.test: The type Sys out interceptor.
SysOutInterceptor.LoggedResult<T> - Class in com.simiacryptus.util.test: The type Logged result.

T

TableOutput - Class in com.simiacryptus.util: The type Table output.
TableOutput() - Constructor for class com.simiacryptus.util.TableOutput
TeeInputStream - Class in com.simiacryptus.util.io: The type Tee input stream.
TeeInputStream(InputStream, OutputStream) - Constructor for class com.simiacryptus.util.io.TeeInputStream: Instantiates a new Tee input stream.
TeeOutputStream - Class in com.simiacryptus.util.io: The type Tee output stream.
TeeOutputStream(OutputStream, boolean) - Constructor for class com.simiacryptus.util.io.TeeOutputStream: Instantiates a new Tee output stream.
TeeOutputStream(OutputStream, OutputStream...) - Constructor for class com.simiacryptus.util.io.TeeOutputStream: Instantiates a new Tee output stream.
terminals - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: The Terminals.
TestCategories - Class in com.simiacryptus.util.test: The type Test categories.
TestCategories() - Constructor for class com.simiacryptus.util.test.TestCategories
TestCategories.Report - Class in com.simiacryptus.util.test: The type Report.
TestCategories.ResearchCode - Class in com.simiacryptus.util.test: The type Research code.
TestCategories.UnitTest - Class in com.simiacryptus.util.test: The type Unit eval.
testName() - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Test name string.
time(UncheckedSupplier<T>) - Static method in class com.simiacryptus.util.lang.TimedResult: Time timed result.
time(UncheckedRunnable<T>) - Static method in class com.simiacryptus.util.lang.TimedResult: Time timed result.
TimedResult<T> - Class in com.simiacryptus.util.lang: The type Timed result.
TimedResult(T, long, long) - Constructor for class com.simiacryptus.util.lang.TimedResult: Instantiates a new Timed result.
timeNanos - Variable in class com.simiacryptus.util.lang.TimedResult: The Time nanos.
TimerText - Class in com.simiacryptus.util: Created by Andrew Charneski on 5/28/2017.
TimerText() - Constructor for class com.simiacryptus.util.TimerText: Instantiates a new Timer text.
toBase64String() - Method in class com.simiacryptus.util.binary.Bits: To base 64 string string.
toBits(Consumer<BitOutputStream>) - Static method in class com.simiacryptus.util.binary.BitOutputStream: To bits bits.
toBits() - Method in class com.simiacryptus.util.binary.Interval: To bits bits.
toBitStream(byte[]) - Static method in class com.simiacryptus.util.binary.BitInputStream: To bit stream bit input stream.
toBitString() - Method in class com.simiacryptus.util.binary.Bits: To bit string string.
toBytes(long) - Static method in class com.simiacryptus.util.binary.Bits: To bytes byte [ ].
toBytes() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: To bytes byte [ ].
toc - Variable in class com.simiacryptus.util.io.MarkdownNotebookOutput: The Toc.
toCSV(boolean) - Method in class com.simiacryptus.util.TableOutput: To csv string.
toHexString() - Method in class com.simiacryptus.util.binary.Bits: To hex string string.
toHtmlTable() - Method in class com.simiacryptus.util.TableOutput: To html table string.
toHtmlTable(boolean) - Method in class com.simiacryptus.util.TableOutput: To html table string.
toImage(Component) - Static method in class com.simiacryptus.util.Util: To image buffered image.
toInlineImage(BufferedImage, String) - Static method in class com.simiacryptus.util.Util: To inline image string.
toInlineImage(LabeledObject<BufferedImage>) - Static method in class com.simiacryptus.util.Util: To inline image string.
toIterator(Iterator<T>) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator: To iterator stream.
toIterator(Iterator<T>) - Static method in class com.simiacryptus.util.Util: To iterator stream.
toJson(Object) - Static method in class com.simiacryptus.util.io.JsonUtil: Write json.
toJson() - Method in interface com.simiacryptus.util.lang.JsonFormattable: To json json object.
toLong() - Method in class com.simiacryptus.util.binary.Bits: To long long.
toMarkdownTable() - Method in class com.simiacryptus.util.TableOutput: To text table string.
toStream(Iterator<T>) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator: To stream stream.
toStream(Iterator<T>, int) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator: To stream stream.
toStream(Iterator<T>, int, boolean) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator: To stream stream.
toStream() - Method in class com.simiacryptus.util.io.BinaryChunkIterator: To stream stream.
toStream(Iterator<T>) - Static method in class com.simiacryptus.util.Util: To stream stream.
toStream(Iterator<T>, int) - Static method in class com.simiacryptus.util.Util: To stream stream.
toStream(Iterator<T>, int, boolean) - Static method in class com.simiacryptus.util.Util: To stream stream.
toString() - Method in class com.simiacryptus.util.binary.Bits
toString() - Method in class com.simiacryptus.util.binary.Interval
toString() - Method in class com.simiacryptus.util.data.DensityTree.Bounds
toString() - Method in class com.simiacryptus.util.data.DensityTree.Node
toString() - Method in class com.simiacryptus.util.data.DensityTree.Rule
toString() - Method in class com.simiacryptus.util.data.DoubleStatistics
toString(double) - Method in class com.simiacryptus.util.data.DoubleStatistics: To string string.
toString() - Method in class com.simiacryptus.util.data.ScalarStatistics
toString(List<CharSequence>) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: To string string.
toString(Throwable) - Static method in class com.simiacryptus.util.lang.LOG: To string string.
toString() - Method in class com.simiacryptus.util.test.LabeledObject
toString() - Method in class com.simiacryptus.util.TimerText
totalWeight - Variable in class com.simiacryptus.util.binary.codes.HammingCode: The Total weight.
totalWeight() - Method in class com.simiacryptus.util.binary.codes.HammingCode: Total weight int.
trim(byte[]) - Static method in class com.simiacryptus.util.binary.Bits: Trim byte [ ].
Tuple2<A,B> - Class in com.simiacryptus.util.lang: The type Tuple 2.
Tuple2(A, B) - Constructor for class com.simiacryptus.util.lang.Tuple2: Instantiates a new Tuple 2.

U

UncheckedRunnable<T> - Interface in com.simiacryptus.util.lang: The interface Unchecked supplier.
UncheckedSupplier<T> - Interface in com.simiacryptus.util.lang: The interface Unchecked supplier.
union(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Bounds: Union bounds.
unitSize - Variable in class com.simiacryptus.util.data.SerialArrayList: The Unit size.
UnitTest() - Constructor for class com.simiacryptus.util.test.TestCategories.UnitTest
update(int, Function<U, U>) - Method in class com.simiacryptus.util.data.SerialArrayList: Update u.
useBinomials() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Use binomials boolean.
useGzipWhenAccepted(NanoHTTPD.Response) - Method in class com.simiacryptus.util.StreamNanoHTTPD
Util - Class in com.simiacryptus.util: The type Util.
Util() - Constructor for class com.simiacryptus.util.Util
uuid() - Static method in class com.simiacryptus.util.Util: Uuid uuid.

V

valueOf(String) - Static method in enum com.simiacryptus.util.binary.bitset.BitsCollection.CodeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.SerializationChecks: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.simiacryptus.util.lang.LOG.Severity: Returns the enum constant of this type with the specified name.
values() - Static method in enum com.simiacryptus.util.binary.bitset.BitsCollection.CodeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.SerializationChecks: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.simiacryptus.util.lang.LOG.Severity: Returns an array containing the constants of this enum type, in the order they are declared.
verifyIndexes() - Method in class com.simiacryptus.util.binary.codes.HammingCode: Verify indexes boolean.

W

WeakCachedSupplier<T> - Class in com.simiacryptus.util.function: The type Weak cached supplier.
WeakCachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.WeakCachedSupplier: Instantiates a new Weak cached supplier.
weights - Variable in class com.simiacryptus.util.binary.codes.HammingCode: The Weights.
withOutput(Runnable) - Static method in class com.simiacryptus.util.test.SysOutInterceptor: With output logged result.
withOutput(UncheckedSupplier<T>) - Static method in class com.simiacryptus.util.test.SysOutInterceptor: With output logged result.
workingDir - Variable in class com.simiacryptus.util.io.HtmlNotebookOutput: Deprecated.

The Working dir.
wrapFrontmatter(Consumer<NotebookOutput>) - Static method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Wrap frontmatter consumer.
write(Bits) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(boolean) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(double) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(Enum<T>) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(short) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(char) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(int) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write.
write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection: Write.
write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection
write(BitOutputStream, int) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Write.
write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection
write(ByteBuffer, T) - Method in interface com.simiacryptus.util.data.SerialType: Write.
write(T) - Method in interface com.simiacryptus.util.data.SerialType: Write byte [ ].
write(byte[], int, int) - Method in class com.simiacryptus.util.io.AsyncOutputStream
write(int) - Method in class com.simiacryptus.util.io.AsyncOutputStream
write(File, int, boolean, BufferedImage...) - Static method in class com.simiacryptus.util.io.GifSequenceWriter: Write.
write(byte[]) - Method in class com.simiacryptus.util.io.TeeOutputStream
write(byte[], int, int) - Method in class com.simiacryptus.util.io.TeeOutputStream
write(int) - Method in class com.simiacryptus.util.io.TeeOutputStream
write(byte[]) - Method in class com.simiacryptus.util.test.SysOutInterceptor
writeArchive(File, File, ZipOutputStream, Predicate<? super File>) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Write archive.
writeBoundedLong(long, long) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write bounded long bits.
writeBranchCounts(CountTreeBitsCollection.BranchCounts, BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Write branch counts.
writeHtmlAndPdf(File, String) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Write html and pdf.
writeJson(T, File) - Static method in class com.simiacryptus.util.io.IOUtil: Write json.
writeJson(OutputStream, Object) - Static method in class com.simiacryptus.util.io.JsonUtil: Write json.
writeKryo(T, OutputStream) - Static method in class com.simiacryptus.util.io.IOUtil: Write kryo.
writeMarkdownWithFrontmatter(PrintWriter) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Write markdown with frontmatter.
writeProjectorData(File, URL) - Method in class com.simiacryptus.util.TableOutput: Write projector data.
writeString(String, OutputStream) - Static method in class com.simiacryptus.util.io.IOUtil: Write string.
writeTerminalCount(BitOutputStream, long, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Write terminal count.
writeToSequence(RenderedImage) - Method in class com.simiacryptus.util.io.GifSequenceWriter: Write to sequence.
writeVarLong(long) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write var long.
writeVarShort(short) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write var short.
writeVarShort(short, int) - Method in class com.simiacryptus.util.binary.BitOutputStream: Write var short.
writeZeroBranchSize(BitOutputStream, long, long, Bits) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection: Write zero branch size.
writeZip(File, String) - Method in class com.simiacryptus.util.io.MarkdownNotebookOutput: Write zip.

X

xorshift(long) - Static method in class com.simiacryptus.util.FastRandom: Xorshift long.

Z

ZERO - Static variable in class com.simiacryptus.util.binary.Bits: The constant ZERO.
zeroCount - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts: The Zero count.

_

_1 - Variable in class com.simiacryptus.util.lang.Tuple2: The 1.
_2 - Variable in class com.simiacryptus.util.lang.Tuple2: The 2.

A B C D E F G H I J K L M N O P R S T U V W X Z _