A B C D E F G H I J K L M N O P R S T U V W X Z _

A

accept(T) - Method in interface com.simiacryptus.lang.UncheckedConsumer

accept(double) - Method in class com.simiacryptus.util.data.DoubleStatistics

accept(double[]) - Method in class com.simiacryptus.util.data.DoubleStatistics

add(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil

add(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil

add(T) - Method in class com.simiacryptus.util.CountCollection

add(T, int) - Method in class com.simiacryptus.util.CountCollection

add(double...) - Method in class com.simiacryptus.util.data.PercentileStatistics

add(double...) - Method in class com.simiacryptus.util.data.ScalarStatistics

add(double) - Method in class com.simiacryptus.util.data.ScalarStatistics

add(ScalarStatistics) - Method in class com.simiacryptus.util.data.ScalarStatistics

add(SerialArrayList<U>) - Method in class com.simiacryptus.util.data.SerialArrayList

add(U) - Method in class com.simiacryptus.util.data.SerialArrayList

add(DoubleSupplier, double[]) - Static method in class com.simiacryptus.util.Util

addAll(Collection<U>) - Method in class com.simiacryptus.util.data.SerialArrayList

addConst(CharSequence, Object) - Method in class com.simiacryptus.util.MonitoredObject

addField(CharSequence, Supplier<Object>) - Method in class com.simiacryptus.util.MonitoredObject

addObj(CharSequence, MonitoredItem) - Method in class com.simiacryptus.util.MonitoredObject

apply(Function<T, U>) - Method in class com.simiacryptus.lang.ResourcePool

apply(Consumer<T>) - Method in class com.simiacryptus.lang.ResourcePool

apply(Function<T, U>, Predicate<T>) - Method in class com.simiacryptus.lang.ResourcePool

apply(Consumer<T>, Predicate<T>) - Method in class com.simiacryptus.lang.ResourcePool

apply(Consumer<T>) - Method in class com.simiacryptus.lang.StaticResourcePool

apply(Consumer<T>, Predicate<T>, boolean) - Method in class com.simiacryptus.lang.StaticResourcePool

ArrayUtil - Class in com.simiacryptus.util

ArrayUtil() - Constructor for class com.simiacryptus.util.ArrayUtil

AsyncListIterator<T> - Class in com.simiacryptus.util.io

AsyncListIterator(List<T>, Thread) - Constructor for class com.simiacryptus.util.io.AsyncListIterator

AsyncOutputStream - Class in com.simiacryptus.util.io

AsyncOutputStream(OutputStream) - Constructor for class com.simiacryptus.util.io.AsyncOutputStream

available() - Method in class com.simiacryptus.util.io.TeeInputStream

availible() - Method in class com.simiacryptus.util.binary.BitInputStream

B

BinaryChunkIterator - Class in com.simiacryptus.util.io

BinaryChunkIterator(DataInputStream, int) - Constructor for class com.simiacryptus.util.io.BinaryChunkIterator

binaryStream(String, String, int, int) - Static method in class com.simiacryptus.util.Util

bitDepth - Variable in class com.simiacryptus.util.binary.bitset.BitsCollection

BitInputStream - Class in com.simiacryptus.util.binary

BitInputStream(InputStream) - Constructor for class com.simiacryptus.util.binary.BitInputStream

bitLength - Variable in class com.simiacryptus.util.binary.Bits

BitOutputStream - Class in com.simiacryptus.util.binary

BitOutputStream(OutputStream) - Constructor for class com.simiacryptus.util.binary.BitOutputStream

Bits - Class in com.simiacryptus.util.binary

Bits(byte...) - Constructor for class com.simiacryptus.util.binary.Bits

Bits(byte[], int) - Constructor for class com.simiacryptus.util.binary.Bits

Bits(long) - Constructor for class com.simiacryptus.util.binary.Bits

Bits(long, int) - Constructor for class com.simiacryptus.util.binary.Bits

Bits(Random, int) - Constructor for class com.simiacryptus.util.binary.Bits

BitsCollection<C extends Map<Bits,AtomicInteger>> - Class in com.simiacryptus.util.binary.bitset

BitsCollection(C) - Constructor for class com.simiacryptus.util.binary.bitset.BitsCollection

BitsCollection(int, C) - Constructor for class com.simiacryptus.util.binary.bitset.BitsCollection

BitsCollection.CodeType - Enum in com.simiacryptus.util.binary.bitset

bitwiseAnd(Bits) - Method in class com.simiacryptus.util.binary.Bits

bitwiseOr(Bits) - Method in class com.simiacryptus.util.binary.Bits

bitwiseXor(Bits) - Method in class com.simiacryptus.util.binary.Bits

Bounds(double[], double[]) - Constructor for class com.simiacryptus.util.data.DensityTree.Bounds

bounds - Variable in class com.simiacryptus.util.data.DensityTree.Node

BranchCounts(Bits, long) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

BranchCounts(Bits, long, long, long, long) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

branches - Variable in class com.simiacryptus.util.io.TeeOutputStream

C

cache(File, Class<T>, Supplier<T>) - Static method in class com.simiacryptus.util.JsonUtil

cache(Function<F, T>) - Static method in class com.simiacryptus.util.Util

CachedSupplier<T> - Class in com.simiacryptus.util.function

CachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.CachedSupplier

cacheFile(String, String) - Static method in class com.simiacryptus.util.Util

cacheFile(URI) - Static method in class com.simiacryptus.util.Util

cacheLocal(String, URI) - Static method in class com.simiacryptus.util.Util

cacheLocal(String, Supplier<InputStream>) - Static method in class com.simiacryptus.util.Util

cacheStream(String, String) - Static method in class com.simiacryptus.util.Util

cacheStream(URI) - Static method in class com.simiacryptus.util.Util

calcNumberStats() - Method in class com.simiacryptus.notebook.TableOutput

clear() - Method in class com.simiacryptus.notebook.TableOutput

clear() - Method in class com.simiacryptus.util.data.PercentileStatistics

clear() - Method in class com.simiacryptus.util.data.ScalarStatistics

clear() - Method in class com.simiacryptus.util.data.SerialArrayList

clear() - Method in class com.simiacryptus.util.io.DataLoader

clearConstants() - Method in class com.simiacryptus.util.MonitoredObject

close() - Method in class com.simiacryptus.util.binary.BitInputStream

close() - Method in class com.simiacryptus.util.binary.BitOutputStream

close() - Method in class com.simiacryptus.util.io.AsyncOutputStream

close() - Method in class com.simiacryptus.util.io.GifSequenceWriter

close() - Method in class com.simiacryptus.util.io.TeeInputStream

close() - Method in class com.simiacryptus.util.io.TeeOutputStream

code() - Method in class com.simiacryptus.util.data.DensityTree.Node

codeSize() - Method in class com.simiacryptus.util.binary.codes.HammingCode

COLLECTOR - Static variable in class com.simiacryptus.util.data.DoubleStatistics

com.simiacryptus.lang - package com.simiacryptus.lang

com.simiacryptus.notebook - package com.simiacryptus.notebook

com.simiacryptus.util - package com.simiacryptus.util

com.simiacryptus.util.binary - package com.simiacryptus.util.binary

com.simiacryptus.util.binary.bitset - package com.simiacryptus.util.binary.bitset

com.simiacryptus.util.binary.codes - package com.simiacryptus.util.binary.codes

com.simiacryptus.util.data - package com.simiacryptus.util.data

com.simiacryptus.util.function - package com.simiacryptus.util.function

com.simiacryptus.util.io - package com.simiacryptus.util.io

com.simiacryptus.util.test - package com.simiacryptus.util.test

combine(DoubleStatistics) - Method in class com.simiacryptus.util.data.DoubleStatistics

compareTo(Bits) - Method in class com.simiacryptus.util.binary.Bits

compareTo(HammingSymbol<T>) - Method in class com.simiacryptus.util.binary.codes.HammingSymbol

computeSums() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

concatenate(Bits) - Method in class com.simiacryptus.util.binary.Bits

copy() - Method in class com.simiacryptus.util.data.SerialArrayList

count - Variable in class com.simiacryptus.util.binary.codes.HammingSymbol

count(T) - Method in class com.simiacryptus.util.CountCollection

CountCollection<T,C extends Map<T,AtomicInteger>> - Class in com.simiacryptus.util

CountCollection(C) - Constructor for class com.simiacryptus.util.CountCollection

CountTreeBitsCollection - Class in com.simiacryptus.util.binary.bitset

CountTreeBitsCollection() - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection(BitInputStream) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection(BitInputStream, int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection(byte[]) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection(byte[], int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection(int) - Constructor for class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

CountTreeBitsCollection.BranchCounts - Class in com.simiacryptus.util.binary.bitset

CountTreeBitsCollection.SerializationChecks - Enum in com.simiacryptus.util.binary.bitset

create() - Method in class com.simiacryptus.lang.ResourcePool

create(Map<CharSequence, Object>...) - Static method in class com.simiacryptus.notebook.TableOutput

currentHandler() - Method in class com.simiacryptus.util.test.SysOutInterceptor

currentStack() - Static method in class com.simiacryptus.util.Util

cvt(TimeUnit) - Static method in class com.simiacryptus.util.Util

D

d(String, Object...) - Static method in class com.simiacryptus.util.LOG

d(Throwable, CharSequence, Object...) - Static method in class com.simiacryptus.util.LOG

data - Variable in class com.simiacryptus.util.data.IntArray

data - Variable in class com.simiacryptus.util.test.LabeledObject

dataCompare(Bits, Bits) - Static method in class com.simiacryptus.util.binary.Bits

DataLoader<T> - Class in com.simiacryptus.util.io

DataLoader() - Constructor for class com.simiacryptus.util.io.DataLoader

dateStr(String) - Static method in class com.simiacryptus.util.Util

decode(BitInputStream, long) - Method in class com.simiacryptus.util.binary.codes.Gaussian

decode(BitInputStream) - Method in class com.simiacryptus.util.binary.codes.HammingCode

decode(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode

DensityTree - Class in com.simiacryptus.util.data

DensityTree(CharSequence...) - Constructor for class com.simiacryptus.util.data.DensityTree

DensityTree.Bounds - Class in com.simiacryptus.util.data

DensityTree.Node - Class in com.simiacryptus.util.data

DensityTree.OrthoRule - Class in com.simiacryptus.util.data

DensityTree.Rule - Class in com.simiacryptus.util.data

divide(long, long, long) - Static method in class com.simiacryptus.util.binary.Bits

dot(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil

dot(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil

DoubleStatistics - Class in com.simiacryptus.util.data

DoubleStatistics() - Constructor for class com.simiacryptus.util.data.DoubleStatistics

E

encode(BitOutputStream, long, long) - Method in class com.simiacryptus.util.binary.codes.Gaussian

encode(T) - Method in class com.simiacryptus.util.binary.codes.HammingCode

end() - Method in class com.simiacryptus.util.binary.Interval

equals(Object) - Method in class com.simiacryptus.util.binary.Bits

equals(Object) - Method in class com.simiacryptus.util.data.IntArray

equals(Object) - Method in class com.simiacryptus.util.data.SerialArrayList

eval(double[]) - Method in class com.simiacryptus.util.data.DensityTree.OrthoRule

eval(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Rule

expect(Enum<T>) - Method in class com.simiacryptus.util.binary.BitInputStream

expect(Bits) - Method in class com.simiacryptus.util.binary.BitInputStream

F

FairAsyncWorkQueue - Class in com.simiacryptus.util.io

FairAsyncWorkQueue() - Constructor for class com.simiacryptus.util.io.FairAsyncWorkQueue

FastRandom - Class in com.simiacryptus.util

FastRandom() - Constructor for class com.simiacryptus.util.FastRandom

FastRandom(long) - Constructor for class com.simiacryptus.util.FastRandom

finalize() - Method in class com.simiacryptus.util.io.AsyncListIterator

fitness - Variable in class com.simiacryptus.util.data.DensityTree.Rule

flush() - Method in class com.simiacryptus.util.binary.BitOutputStream

flush() - Method in class com.simiacryptus.util.io.AsyncOutputStream

flush() - Method in class com.simiacryptus.util.io.TeeOutputStream

forwardIndex - Variable in class com.simiacryptus.util.binary.codes.HammingCode

fromBinomial(double, long) - Static method in class com.simiacryptus.util.binary.codes.Gaussian

G

Gaussian - Class in com.simiacryptus.util.binary.codes

Gaussian(double, double) - Constructor for class com.simiacryptus.util.binary.codes.Gaussian

gc_seconds() - Method in class com.simiacryptus.lang.TimedResult

gcMs - Variable in class com.simiacryptus.lang.TimedResult

get() - Method in class com.simiacryptus.lang.ResourcePool

get(Predicate<T>) - Method in class com.simiacryptus.lang.ResourcePool

get() - Method in class com.simiacryptus.lang.SupplierWeakCache

get() - Method in interface com.simiacryptus.lang.UncheckedRunnable

get() - Method in interface com.simiacryptus.lang.UncheckedSupplier

get(int) - Method in class com.simiacryptus.util.data.IntArray

get(int) - Method in class com.simiacryptus.util.data.SerialArrayList

get() - Method in class com.simiacryptus.util.function.CachedSupplier

get() - Method in class com.simiacryptus.util.function.SoftCachedSupplier

get() - Method in class com.simiacryptus.util.function.WeakCachedSupplier

get(String) - Static method in class com.simiacryptus.util.Util

getAll() - Method in class com.simiacryptus.lang.StaticResourcePool

getBounds(double[][]) - Method in class com.simiacryptus.util.data.DensityTree

getBytes() - Method in class com.simiacryptus.util.binary.Bits

getCaller() - Static method in class com.simiacryptus.util.Util

getCodes(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode

getColumnNames() - Method in class com.simiacryptus.util.data.DensityTree

getCount() - Method in class com.simiacryptus.util.data.ScalarStatistics

getDepth() - Method in class com.simiacryptus.util.data.DensityTree.Node

getDoubleArray(JsonArray) - Static method in class com.simiacryptus.util.JsonUtil

getDoubles(float[]) - Static method in class com.simiacryptus.util.Util

getFirst() - Method in class com.simiacryptus.lang.Tuple2

getFloats(double[]) - Static method in class com.simiacryptus.util.Util

getInner() - Method in class com.simiacryptus.util.test.SysOutInterceptor

getIntArray(JsonArray) - Static method in class com.simiacryptus.util.JsonUtil

getJson() - Method in class com.simiacryptus.util.data.ScalarStatistics

getJson(double[]) - Static method in class com.simiacryptus.util.JsonUtil

getJson(int[]) - Static method in class com.simiacryptus.util.JsonUtil

getLeft() - Method in class com.simiacryptus.util.data.DensityTree.Node

getList() - Method in class com.simiacryptus.util.CountCollection

getMap() - Method in class com.simiacryptus.util.CountCollection

getMapper() - Static method in class com.simiacryptus.util.JsonUtil

getMaxDepth() - Method in class com.simiacryptus.util.data.DensityTree

getMean() - Method in class com.simiacryptus.util.data.ScalarStatistics

getMeanPower() - Method in class com.simiacryptus.util.data.ScalarStatistics

getMemorySize() - Method in class com.simiacryptus.util.data.SerialArrayList

getMetrics() - Method in class com.simiacryptus.util.data.PercentileStatistics

getMetrics() - Method in class com.simiacryptus.util.data.ScalarStatistics

getMetrics() - Method in interface com.simiacryptus.util.MonitoredItem

getMetrics() - Method in class com.simiacryptus.util.MonitoredObject

getMinFitness() - Method in class com.simiacryptus.util.data.DensityTree

getMinSplitFract() - Method in class com.simiacryptus.util.data.DensityTree

getPercentile(double) - Method in class com.simiacryptus.util.data.PercentileStatistics

getRight() - Method in class com.simiacryptus.util.data.DensityTree.Node

getRule() - Method in class com.simiacryptus.util.data.DensityTree.Node

getSecond() - Method in class com.simiacryptus.lang.Tuple2

getSetEncoder() - Method in class com.simiacryptus.util.binary.codes.HammingCode

getSetEncoder(BitInputStream) - Method in class com.simiacryptus.util.binary.codes.HammingCode

getSetEncoder(byte[]) - Method in class com.simiacryptus.util.binary.codes.HammingCode

getSize() - Method in interface com.simiacryptus.util.data.SerialType

getSoftRef() - Method in class com.simiacryptus.util.function.WeakCachedSupplier

getSplitSizeThreshold() - Method in class com.simiacryptus.util.data.DensityTree

getStackTrace() - Static method in class com.simiacryptus.util.Util

getStackTrace(int) - Static method in class com.simiacryptus.util.Util

getStandardDeviation() - Method in class com.simiacryptus.util.data.DoubleStatistics

getStdDev() - Method in class com.simiacryptus.util.data.ScalarStatistics

getStreamSupplier(URI) - Static method in class com.simiacryptus.util.Util

getSumOfSquare() - Method in class com.simiacryptus.util.data.DoubleStatistics

getTotalBitsWritten() - Method in class com.simiacryptus.util.binary.BitOutputStream

getType(Bits) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection

getType(Bits) - Method in class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection

getVolume() - Method in class com.simiacryptus.util.data.DensityTree.Bounds

getWeights() - Method in class com.simiacryptus.util.binary.codes.HammingCode

GifSequenceWriter - Class in com.simiacryptus.util.io

GifSequenceWriter(ImageOutputStream, int, int, boolean) - Constructor for class com.simiacryptus.util.io.GifSequenceWriter

gifWriter - Variable in class com.simiacryptus.util.io.GifSequenceWriter

H

HammingCode<T extends Comparable<T>> - Class in com.simiacryptus.util.binary.codes

HammingCode(Collection<HammingSymbol<T>>) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode

HammingCode.HammingCodeCollection - Class in com.simiacryptus.util.binary.codes

HammingCodeCollection() - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection

HammingCodeCollection(BitInputStream) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection

HammingCodeCollection(byte[]) - Constructor for class com.simiacryptus.util.binary.codes.HammingCode.HammingCodeCollection

HammingSymbol<T extends Comparable<T>> - Class in com.simiacryptus.util.binary.codes

HammingSymbol(int, T) - Constructor for class com.simiacryptus.util.binary.codes.HammingSymbol

hashCode() - Method in class com.simiacryptus.util.binary.Bits

hashCode() - Method in class com.simiacryptus.util.data.IntArray

hashCode() - Method in class com.simiacryptus.util.data.SerialArrayList

hasNext() - Method in class com.simiacryptus.util.io.AsyncListIterator

hasNext() - Method in class com.simiacryptus.util.io.BinaryChunkIterator

highestOneBit(long) - Static method in class com.simiacryptus.util.binary.Bits

I

imageMetaData - Variable in class com.simiacryptus.util.io.GifSequenceWriter

imageWriteParam - Variable in class com.simiacryptus.util.io.GifSequenceWriter

init() - Method in class com.simiacryptus.util.test.SysOutInterceptor

INSTANCE - Static variable in class com.simiacryptus.util.FastRandom

INSTANCE - Static variable in class com.simiacryptus.util.test.SysOutInterceptor

IntArray - Class in com.simiacryptus.util.data

IntArray(int[]) - Constructor for class com.simiacryptus.util.data.IntArray

Interval - Class in com.simiacryptus.util.binary

Interval(long, long, long) - Constructor for class com.simiacryptus.util.binary.Interval

IOUtil - Class in com.simiacryptus.util

IOUtil() - Constructor for class com.simiacryptus.util.IOUtil

isChainCloses() - Method in class com.simiacryptus.util.io.TeeOutputStream

isNull(T, T) - Static method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

isPrefixFreeCode(Set<Bits>) - Static method in class com.simiacryptus.util.binary.codes.HammingCode

J

JsonFormattable - Interface in com.simiacryptus.lang

JsonUtil - Class in com.simiacryptus.util

JsonUtil() - Constructor for class com.simiacryptus.util.JsonUtil

K

key - Variable in class com.simiacryptus.util.binary.codes.HammingSymbol

kryo() - Static method in class com.simiacryptus.util.KryoUtil

KryoUtil - Class in com.simiacryptus.util

KryoUtil() - Constructor for class com.simiacryptus.util.KryoUtil

L

label - Variable in class com.simiacryptus.util.test.LabeledObject

LabeledObject<T> - Class in com.simiacryptus.util.test

LabeledObject(T, String) - Constructor for class com.simiacryptus.util.test.LabeledObject

layout(Component) - Static method in class com.simiacryptus.util.Util

leftShift(int) - Method in class com.simiacryptus.util.binary.Bits

length - Variable in class com.simiacryptus.util.binary.Interval

length() - Method in class com.simiacryptus.util.data.SerialArrayList

LocalAppSettings - Class in com.simiacryptus.util

LocalAppSettings(HashMap<String, String>) - Constructor for class com.simiacryptus.util.LocalAppSettings

LOG - Class in com.simiacryptus.util

LOG() - Constructor for class com.simiacryptus.util.LOG

log - Variable in class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult

LOG.Severity - Enum in com.simiacryptus.util

LOG2 - Static variable in class com.simiacryptus.util.binary.codes.Gaussian

log2(double) - Static method in class com.simiacryptus.util.binary.codes.Gaussian

LoggedResult(T, String) - Constructor for class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult

logger - Static variable in class com.simiacryptus.notebook.TableOutput

M

magnitude(double[]) - Static method in class com.simiacryptus.util.ArrayUtil

map - Variable in class com.simiacryptus.util.CountCollection

map(Function<T, U>) - Method in class com.simiacryptus.util.test.LabeledObject

max - Variable in class com.simiacryptus.util.binary.Interval

max - Variable in class com.simiacryptus.util.data.DensityTree.Bounds

maximumSize(BufferedImage, int) - Static method in class com.simiacryptus.util.Util

mean(double[]) - Static method in class com.simiacryptus.util.ArrayUtil

mean - Variable in class com.simiacryptus.util.binary.codes.Gaussian

min - Variable in class com.simiacryptus.util.data.DensityTree.Bounds

minus(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil

mkString(CharSequence, CharSequence...) - Static method in class com.simiacryptus.util.Util

MonitoredItem - Interface in com.simiacryptus.util

MonitoredObject - Class in com.simiacryptus.util

MonitoredObject() - Constructor for class com.simiacryptus.util.MonitoredObject

multiply(double[], double) - Static method in class com.simiacryptus.util.ArrayUtil

multiply(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil

multiply(List<double[]>, double) - Static method in class com.simiacryptus.util.ArrayUtil

multiply(List<double[]>, List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil

N

name - Variable in class com.simiacryptus.util.data.DensityTree.Rule

newInputStream() - Method in class com.simiacryptus.util.io.TeeOutputStream

newList() - Method in interface com.simiacryptus.util.data.SerialType

newList(int) - Method in interface com.simiacryptus.util.data.SerialType

newList(T...) - Method in interface com.simiacryptus.util.data.SerialType

next() - Method in class com.simiacryptus.util.binary.Bits

next() - Method in class com.simiacryptus.util.FastRandom

next() - Method in class com.simiacryptus.util.io.AsyncListIterator

next() - Method in class com.simiacryptus.util.io.BinaryChunkIterator

Node(double[][]) - Constructor for class com.simiacryptus.util.data.DensityTree.Node

Node(double[][], int) - Constructor for class com.simiacryptus.util.data.DensityTree.Node

NotImplementedException - Exception in com.simiacryptus.lang

NotImplementedException() - Constructor for exception com.simiacryptus.lang.NotImplementedException

Deprecated.

NotImplementedException(String) - Constructor for exception com.simiacryptus.lang.NotImplementedException

Deprecated.

NULL - Static variable in class com.simiacryptus.util.binary.Bits

NUMBERS - Static variable in class com.simiacryptus.util.data.DoubleStatistics

O

obj - Variable in class com.simiacryptus.util.test.SysOutInterceptor.LoggedResult

ONE - Static variable in class com.simiacryptus.util.binary.Bits

oneCount - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

op(double[], double[], DoubleBinaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil

op(double[], DoubleUnaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil

op(List<double[]>, DoubleUnaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil

op(List<double[]>, List<double[]>, DoubleBinaryOperator) - Static method in class com.simiacryptus.util.ArrayUtil

ORIGINAL_OUT - Static variable in class com.simiacryptus.util.test.SysOutInterceptor

OrthoRule(int, double) - Constructor for class com.simiacryptus.util.data.DensityTree.OrthoRule

P

padLeft(int) - Method in class com.simiacryptus.util.binary.Bits

padLeftBytes(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits

padRight(long) - Method in class com.simiacryptus.util.binary.Bits

path - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

pathTo(File, File) - Static method in class com.simiacryptus.util.Util

pathToFile(File, File) - Static method in class com.simiacryptus.util.Util

peek(int) - Method in class com.simiacryptus.util.binary.BitInputStream

peekIntCoord(int) - Method in class com.simiacryptus.util.binary.BitInputStream

peekLongCoord(long) - Method in class com.simiacryptus.util.binary.BitInputStream

PercentileStatistics - Class in com.simiacryptus.util.data

PercentileStatistics() - Constructor for class com.simiacryptus.util.data.PercentileStatistics

points - Variable in class com.simiacryptus.util.data.DensityTree.Node

predict(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Node

primary - Variable in class com.simiacryptus.util.io.TeeOutputStream

print(String) - Method in class com.simiacryptus.util.test.SysOutInterceptor

println(String) - Method in class com.simiacryptus.util.test.SysOutInterceptor

properties - Variable in class com.simiacryptus.util.LocalAppSettings

putAll(Collection<U>, int) - Method in class com.simiacryptus.util.data.SerialArrayList

putAll(SerialArrayList<U>, int) - Method in class com.simiacryptus.util.data.SerialArrayList

putRow(Map<? extends CharSequence, ? extends Object>) - Method in class com.simiacryptus.notebook.TableOutput

R

R - Static variable in class com.simiacryptus.util.Util

random() - Method in class com.simiacryptus.util.FastRandom

range(int) - Method in class com.simiacryptus.util.binary.Bits

range(int, int) - Method in class com.simiacryptus.util.binary.Bits

read(int) - Method in class com.simiacryptus.util.binary.BitInputStream

read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection

read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

read(BitInputStream, int) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

read(BitInputStream) - Method in class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection

read(ByteBuffer) - Method in interface com.simiacryptus.util.data.SerialType

read(byte[]) - Method in interface com.simiacryptus.util.data.SerialType

read(List<T>) - Method in class com.simiacryptus.util.io.DataLoader

read() - Method in class com.simiacryptus.util.io.TeeInputStream

read(byte[]) - Method in class com.simiacryptus.util.io.TeeInputStream

read(byte[], int, int) - Method in class com.simiacryptus.util.io.TeeInputStream

read() - Static method in class com.simiacryptus.util.LocalAppSettings

read(File) - Static method in class com.simiacryptus.util.LocalAppSettings

read(DataInputStream, int) - Static method in class com.simiacryptus.util.Util

readAhead() - Method in class com.simiacryptus.util.binary.BitInputStream

readAhead(int) - Method in class com.simiacryptus.util.binary.BitInputStream

readBool() - Method in class com.simiacryptus.util.binary.BitInputStream

readBoundedLong(long) - Method in class com.simiacryptus.util.binary.BitInputStream

readBranchCounts(BitInputStream, Bits, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

readChar() - Method in class com.simiacryptus.util.binary.BitInputStream

readJson(JsonObject) - Method in class com.simiacryptus.util.data.ScalarStatistics

readJson(File) - Static method in class com.simiacryptus.util.IOUtil

readKryo(File) - Static method in class com.simiacryptus.util.IOUtil

readTerminalCount(BitInputStream, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

readVarLong() - Method in class com.simiacryptus.util.binary.BitInputStream

readVarShort() - Method in class com.simiacryptus.util.binary.BitInputStream

readVarShort(int) - Method in class com.simiacryptus.util.binary.BitInputStream

readZeroBranchSize(BitInputStream, long, Bits) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

Report() - Constructor for class com.simiacryptus.util.test.TestCategories.Report

ResearchCode() - Constructor for class com.simiacryptus.util.test.TestCategories.ResearchCode

ResourcePool<T> - Class in com.simiacryptus.lang

ResourcePool(int) - Constructor for class com.simiacryptus.lang.ResourcePool

result - Variable in class com.simiacryptus.lang.TimedResult

reverseIndex - Variable in class com.simiacryptus.util.binary.codes.HammingCode

rows - Variable in class com.simiacryptus.notebook.TableOutput

Rule(String) - Constructor for class com.simiacryptus.util.data.DensityTree.Rule

run(Function<T, U>) - Method in class com.simiacryptus.lang.StaticResourcePool

run(Function<T, U>, Predicate<T>, boolean) - Method in class com.simiacryptus.lang.StaticResourcePool

run() - Method in class com.simiacryptus.util.io.FairAsyncWorkQueue

runAllParallel(Runnable...) - Static method in class com.simiacryptus.util.Util

runAllSerial(Runnable...) - Static method in class com.simiacryptus.util.Util

RunLengthBitsCollection - Class in com.simiacryptus.util.binary.bitset

RunLengthBitsCollection(int) - Constructor for class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection

S

ScalarStatistics - Class in com.simiacryptus.util.data

ScalarStatistics() - Constructor for class com.simiacryptus.util.data.ScalarStatistics

schema - Variable in class com.simiacryptus.notebook.TableOutput

seconds() - Method in class com.simiacryptus.lang.TimedResult

SerialArrayList<U> - Class in com.simiacryptus.util.data

SerialArrayList(SerialType<U>, SerialArrayList<U>...) - Constructor for class com.simiacryptus.util.data.SerialArrayList

SerialArrayList(SerialType<U>, Collection<U>) - Constructor for class com.simiacryptus.util.data.SerialArrayList

SerialArrayList(SerialType<U>, U...) - Constructor for class com.simiacryptus.util.data.SerialArrayList

SerialArrayList(SerialType<U>) - Constructor for class com.simiacryptus.util.data.SerialArrayList

SerialArrayList(SerialType<U>, int) - Constructor for class com.simiacryptus.util.data.SerialArrayList

SerializableCallable<T> - Interface in com.simiacryptus.lang

SerializableConsumer<T> - Interface in com.simiacryptus.lang

SerializableFunction<T,U> - Interface in com.simiacryptus.lang

SerializableRunnable - Interface in com.simiacryptus.lang

SerializableSupplier<T> - Interface in com.simiacryptus.lang

SERIALIZATION_CHECKS - Static variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

SerialType<T> - Interface in com.simiacryptus.util.data

set(int, U) - Method in class com.simiacryptus.util.data.SerialArrayList

setChainCloses(boolean) - Method in class com.simiacryptus.util.io.TeeOutputStream

setCurrentHandler(PrintStream) - Method in class com.simiacryptus.util.test.SysOutInterceptor

setLeft(DensityTree.Node) - Method in class com.simiacryptus.util.data.DensityTree.Node

setMaxDepth(int) - Method in class com.simiacryptus.util.data.DensityTree

setMinFitness(double) - Method in class com.simiacryptus.util.data.DensityTree

setMinSplitFract(double) - Method in class com.simiacryptus.util.data.DensityTree

setRight(DensityTree.Node) - Method in class com.simiacryptus.util.data.DensityTree.Node

setRule(DensityTree.Rule) - Method in class com.simiacryptus.util.data.DensityTree.Node

setSplitSizeThreshold(int) - Method in class com.simiacryptus.util.data.DensityTree

setUseBinomials(boolean) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

shiftLeft(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits

shiftLeft(byte[], int, byte[]) - Static method in class com.simiacryptus.util.binary.Bits

shiftRight(byte[], int) - Static method in class com.simiacryptus.util.binary.Bits

size() - Method in class com.simiacryptus.lang.ResourcePool

size() - Method in class com.simiacryptus.lang.StaticResourcePool

size - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

size() - Method in class com.simiacryptus.util.data.IntArray

sleep(int) - Static method in class com.simiacryptus.util.Util

SoftCachedSupplier<T> - Class in com.simiacryptus.util.function

SoftCachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.SoftCachedSupplier

split() - Method in class com.simiacryptus.util.data.DensityTree.Node

split_ortho(int) - Method in class com.simiacryptus.util.data.DensityTree.Node

start - Variable in class com.simiacryptus.util.binary.Interval

startsWith(Bits) - Method in class com.simiacryptus.util.binary.Bits

StaticResourcePool<T> - Class in com.simiacryptus.lang

StaticResourcePool(List<T>) - Constructor for class com.simiacryptus.lang.StaticResourcePool

stats(double[]) - Static method in class com.simiacryptus.util.data.ScalarStatistics

stdDev - Variable in class com.simiacryptus.util.binary.codes.Gaussian

stop() - Method in class com.simiacryptus.util.io.DataLoader

stream() - Method in class com.simiacryptus.util.io.DataLoader

stripPrefix(String, String) - Static method in class com.simiacryptus.util.Util

submit(Runnable) - Method in class com.simiacryptus.util.io.FairAsyncWorkQueue

subtract(double[], double[]) - Static method in class com.simiacryptus.util.ArrayUtil

subtract(ScalarStatistics) - Method in class com.simiacryptus.util.data.ScalarStatistics

sum(double[]) - Static method in class com.simiacryptus.util.ArrayUtil

sum(double[], double) - Static method in class com.simiacryptus.util.ArrayUtil

sum(List<double[]>) - Static method in class com.simiacryptus.util.ArrayUtil

sum(Collection<Long>) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

SupplierWeakCache<T> - Class in com.simiacryptus.lang

SupplierWeakCache(Supplier<T>) - Constructor for class com.simiacryptus.lang.SupplierWeakCache

SysOutInterceptor - Class in com.simiacryptus.util.test

SysOutInterceptor.LoggedResult<T> - Class in com.simiacryptus.util.test

T

TableOutput - Class in com.simiacryptus.notebook

TableOutput() - Constructor for class com.simiacryptus.notebook.TableOutput

TeeInputStream - Class in com.simiacryptus.util.io

TeeInputStream(InputStream, OutputStream) - Constructor for class com.simiacryptus.util.io.TeeInputStream

TeeOutputStream - Class in com.simiacryptus.util.io

TeeOutputStream(OutputStream, boolean) - Constructor for class com.simiacryptus.util.io.TeeOutputStream

TeeOutputStream(OutputStream, OutputStream...) - Constructor for class com.simiacryptus.util.io.TeeOutputStream

terminals - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

TestCategories - Class in com.simiacryptus.util.test

TestCategories() - Constructor for class com.simiacryptus.util.test.TestCategories

TestCategories.Report - Class in com.simiacryptus.util.test

TestCategories.ResearchCode - Class in com.simiacryptus.util.test

TestCategories.UnitTest - Class in com.simiacryptus.util.test

time(UncheckedSupplier<T>) - Static method in class com.simiacryptus.lang.TimedResult

time(UncheckedRunnable<T>) - Static method in class com.simiacryptus.lang.TimedResult

TimedResult<T> - Class in com.simiacryptus.lang

TimedResult(T, long, long) - Constructor for class com.simiacryptus.lang.TimedResult

timeNanos - Variable in class com.simiacryptus.lang.TimedResult

TimerText - Class in com.simiacryptus.util

TimerText() - Constructor for class com.simiacryptus.util.TimerText

toBase64String() - Method in class com.simiacryptus.util.binary.Bits

toBits(Consumer<BitOutputStream>) - Static method in class com.simiacryptus.util.binary.BitOutputStream

toBits() - Method in class com.simiacryptus.util.binary.Interval

toBitStream(byte[]) - Static method in class com.simiacryptus.util.binary.BitInputStream

toBitString() - Method in class com.simiacryptus.util.binary.Bits

toBytes(long) - Static method in class com.simiacryptus.util.binary.Bits

toBytes() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

toCSV(boolean) - Method in class com.simiacryptus.notebook.TableOutput

toHexString() - Method in class com.simiacryptus.util.binary.Bits

toHtmlTable() - Method in class com.simiacryptus.notebook.TableOutput

toHtmlTable(boolean) - Method in class com.simiacryptus.notebook.TableOutput

toImage(Component) - Static method in class com.simiacryptus.util.Util

toInlineImage(BufferedImage, String) - Static method in class com.simiacryptus.util.Util

toInlineImage(LabeledObject<BufferedImage>) - Static method in class com.simiacryptus.util.Util

toInt(long[]) - Static method in class com.simiacryptus.util.Util

toIntArray(JsonArray) - Static method in class com.simiacryptus.util.JsonUtil

toIntArray(int[]) - Static method in class com.simiacryptus.util.JsonUtil

toIterator(Iterator<T>) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator

toIterator(Iterator<T>) - Static method in class com.simiacryptus.util.Util

toJson() - Method in interface com.simiacryptus.lang.JsonFormattable

toJson(Object) - Static method in class com.simiacryptus.util.JsonUtil

toJson(Object, ObjectMapper) - Static method in class com.simiacryptus.util.JsonUtil

toLong() - Method in class com.simiacryptus.util.binary.Bits

toLong(int[]) - Static method in class com.simiacryptus.util.Util

toMarkdownTable() - Method in class com.simiacryptus.notebook.TableOutput

toStream(Iterator<T>) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator

toStream(Iterator<T>, int) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator

toStream(Iterator<T>, int, boolean) - Static method in class com.simiacryptus.util.io.BinaryChunkIterator

toStream() - Method in class com.simiacryptus.util.io.BinaryChunkIterator

toStream(Iterator<T>) - Static method in class com.simiacryptus.util.Util

toStream(Iterator<T>, int) - Static method in class com.simiacryptus.util.Util

toStream(Iterator<T>, int, boolean) - Static method in class com.simiacryptus.util.Util

toString() - Method in class com.simiacryptus.util.binary.Bits

toString() - Method in class com.simiacryptus.util.binary.Interval

toString() - Method in class com.simiacryptus.util.data.DensityTree.Bounds

toString() - Method in class com.simiacryptus.util.data.DensityTree.Node

toString() - Method in class com.simiacryptus.util.data.DensityTree.Rule

toString() - Method in class com.simiacryptus.util.data.DoubleStatistics

toString(double) - Method in class com.simiacryptus.util.data.DoubleStatistics

toString() - Method in class com.simiacryptus.util.data.ScalarStatistics

toString(Throwable) - Static method in class com.simiacryptus.util.LOG

toString() - Method in class com.simiacryptus.util.test.LabeledObject

toString() - Method in class com.simiacryptus.util.TimerText

toString(Path) - Static method in class com.simiacryptus.util.Util

toString(Consumer<PrintStream>) - Static method in class com.simiacryptus.util.Util

toString(StackTraceElement[]) - Static method in class com.simiacryptus.util.Util

toString(StackTraceElement[], CharSequence) - Static method in class com.simiacryptus.util.Util

toString(Throwable) - Static method in class com.simiacryptus.util.Util

totalWeight - Variable in class com.simiacryptus.util.binary.codes.HammingCode

totalWeight() - Method in class com.simiacryptus.util.binary.codes.HammingCode

trim(byte[]) - Static method in class com.simiacryptus.util.binary.Bits

Tuple2<A,B> - Class in com.simiacryptus.lang

Tuple2() - Constructor for class com.simiacryptus.lang.Tuple2

Tuple2(A, B) - Constructor for class com.simiacryptus.lang.Tuple2

U

UncheckedConsumer<T> - Interface in com.simiacryptus.lang

UncheckedRunnable<T> - Interface in com.simiacryptus.lang

UncheckedSupplier<T> - Interface in com.simiacryptus.lang

union(double[]) - Method in class com.simiacryptus.util.data.DensityTree.Bounds

unitSize - Variable in class com.simiacryptus.util.data.SerialArrayList

UnitTest() - Constructor for class com.simiacryptus.util.test.TestCategories.UnitTest

update(int, Function<U, U>) - Method in class com.simiacryptus.util.data.SerialArrayList

useBinomials() - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

Util - Class in com.simiacryptus.util

Util() - Constructor for class com.simiacryptus.util.Util

uuid() - Static method in class com.simiacryptus.util.Util

V

valueOf(String) - Static method in enum com.simiacryptus.util.binary.bitset.BitsCollection.CodeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.SerializationChecks

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.simiacryptus.util.LOG.Severity

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.simiacryptus.util.binary.bitset.BitsCollection.CodeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.SerializationChecks

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.simiacryptus.util.LOG.Severity

Returns an array containing the constants of this enum type, in the order they are declared.

verifyIndexes() - Method in class com.simiacryptus.util.binary.codes.HammingCode

W

WeakCachedSupplier<T> - Class in com.simiacryptus.util.function

WeakCachedSupplier(Supplier<T>) - Constructor for class com.simiacryptus.util.function.WeakCachedSupplier

weights - Variable in class com.simiacryptus.util.binary.codes.HammingCode

withOutput(Runnable) - Static method in class com.simiacryptus.util.test.SysOutInterceptor

withOutput(UncheckedSupplier<T>) - Static method in class com.simiacryptus.util.test.SysOutInterceptor

write(Bits) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(boolean) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(double) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(Enum<T>) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(short) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(char) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(int) - Method in class com.simiacryptus.util.binary.BitOutputStream

write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.BitsCollection

write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

write(BitOutputStream, int) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

write(BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.RunLengthBitsCollection

write(ByteBuffer, T) - Method in interface com.simiacryptus.util.data.SerialType

write(T) - Method in interface com.simiacryptus.util.data.SerialType

write(byte[], int, int) - Method in class com.simiacryptus.util.io.AsyncOutputStream

write(int) - Method in class com.simiacryptus.util.io.AsyncOutputStream

write(File, int, boolean, BufferedImage...) - Static method in class com.simiacryptus.util.io.GifSequenceWriter

write(ImageOutputStream, int, boolean, BufferedImage...) - Static method in class com.simiacryptus.util.io.GifSequenceWriter

write(byte[]) - Method in class com.simiacryptus.util.io.TeeOutputStream

write(byte[], int, int) - Method in class com.simiacryptus.util.io.TeeOutputStream

write(int) - Method in class com.simiacryptus.util.io.TeeOutputStream

write(byte[]) - Method in class com.simiacryptus.util.test.SysOutInterceptor

writeBoundedLong(long, long) - Method in class com.simiacryptus.util.binary.BitOutputStream

writeBranchCounts(CountTreeBitsCollection.BranchCounts, BitOutputStream) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

writeJson(T, File) - Static method in class com.simiacryptus.util.IOUtil

writeKryo(T, OutputStream) - Static method in class com.simiacryptus.util.IOUtil

writeProjectorData(File, URL) - Method in class com.simiacryptus.notebook.TableOutput

writeString(String, OutputStream) - Static method in class com.simiacryptus.util.IOUtil

writeTerminalCount(BitOutputStream, long, long) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

writeToSequence(RenderedImage) - Method in class com.simiacryptus.util.io.GifSequenceWriter

writeVarLong(long) - Method in class com.simiacryptus.util.binary.BitOutputStream

writeVarShort(short) - Method in class com.simiacryptus.util.binary.BitOutputStream

writeVarShort(short, int) - Method in class com.simiacryptus.util.binary.BitOutputStream

writeZeroBranchSize(BitOutputStream, long, long, Bits) - Method in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection

X

xorshift(long) - Static method in class com.simiacryptus.util.FastRandom

Z

ZERO - Static variable in class com.simiacryptus.util.binary.Bits

zeroCount - Variable in class com.simiacryptus.util.binary.bitset.CountTreeBitsCollection.BranchCounts

_

_1 - Variable in class com.simiacryptus.lang.Tuple2

_2 - Variable in class com.simiacryptus.lang.Tuple2

A B C D E F G H I J K L M N O P R S T U V W X Z _