All Classes
AbstractCompound
AbstractCompoundSet
AbstractCompoundTranslator
AbstractFeature
AbstractLocation
AbstractNucleotideCompoundSet
AbstractSequence
AbstractSequence.AnnotationType
AccesionedLocation
Accessioned
AccessionID
AmbiguityDNACompoundSet
AmbiguityRNACompoundSet
AminoAcidCompound
AminoAcidCompoundSet
ArrayListProxySequenceReader
ArrayListSequenceReader
BasicSequence
BitSequenceReader
BitSequenceReader.BitArrayWorker
BufferedReaderBytesRead
CaseInsensitiveCompound
CasePreservingProteinSequenceCreator
CDSComparator
CDSSequence
ChromosomeSequence
ClasspathResource
CodonCompound
ComplementCompound
ComplementSequenceView
Compound
CompoundNotFoundException
CompoundSet
CompoundTranslator
ConcurrencyTools
CRC64Checksum
DatabaseReferenceInterface
DataSource
DBReferenceInfo
DNACompoundSet
DNASequence
DNASequence.DNAType
DNASequenceCreator
DNAToRNATranslator
Edit
Edit.AbstractEdit
Edit.Delete
Edit.Insert
Edit.Substitute
Equals
ExonComparator
ExonSequence
FastaGeneWriter
FastaHeaderFormatInterface
FastaReader
FastaReaderHelper
FastaSequenceParser
FastaWriter
FastaWriterHelper
FeatureDbReferenceInfo
FeatureInterface
FeatureRetriever
FeaturesKeyWordInterface
FileProxyDNASequenceCreator
FileProxyProteinSequenceCreator
FlatFileCache
FourBitSequenceReader
FourBitSequenceReader.FourBitArrayWorker
Frame
FuzzyPoint
GenbankHeaderFormatInterface
GenbankProxySequenceReader
GenbankReader
GenbankReaderHelper
GenbankSequenceParser
GenbankWriter
GenbankWriterHelper
GenericFastaHeaderFormat
GenericFastaHeaderParser
GenericGenbankHeaderFormat
GenericGenbankHeaderParser
GenericInsdcHeaderFormat
GeneSequence
Hashcoder
InputStreamProvider
InsdcLocations
InsdcLocations.BondLocation
InsdcLocations.GroupLocation
InsdcLocations.OneOfLocation
InsdcLocations.OrderLocation
InsdcParser
IntronSequence
IOUtils
IOUtils.ReaderProcessor
IUPACParser
IUPACParser.IUPACTable
JoiningSequenceReader
LightweightProfile
LightweightProfile.StringFormat
Location
Location.Tools
LocationHelper
MultipleSequenceAlignment
NucleotideCompound
ParserException
PlainFastaHeaderParser
Point
Point.Resolver
PrettyXMLWriter
ProteinSequence
ProteinSequenceCreator
ProxySequenceReader
Qualifier
QualityFeature
QuantityFeature
ReversedSequenceView
RNACompoundSet
RNASequence
RNASequenceCreator
RnaSequenceView
RNAToAminoAcidTranslator
Sequence
SequenceAsStringHelper
SequenceComparator
SequenceCreatorInterface
SequenceFileProxyLoader
SequenceHeaderParserInterface
SequenceLocation
SequenceMixin
SequenceMixin.SequenceIterator
SequenceOptimizationHints
SequenceOptimizationHints.SequenceCollection
SequenceOptimizationHints.SequenceUsage
SequenceParserInterface
SequenceProxyView
SequenceReader
SequenceTools
SequenceView
SimpleLocation
SimplePoint
SingleCompoundSequenceReader
SingleLinkageClusterer
SoftHashMap
StartCodonSequence
StopCodonSequence
Strand
StringManipulationHelper
StringProxySequenceReader
Table
Table.CaseInsensitiveTriplet
Table.Codon
TaxonomyID
TextFeature
TranscriptionEngine
TranscriptionEngine.Builder
TranscriptSequence
TranslationException
TwoBitSequenceReader
TwoBitSequenceReader.TwoBitArrayWorker
UncompressInputStream
UniprotProxySequenceReader
WindowedSequence
XMLHelper
XMLWriter