org.biojava.nbio.core.sequence.compound

Class AminoAcidCompound

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompound

org.biojava.nbio.core.sequence.compound.AminoAcidCompound

All Implemented Interfaces:

Compound

public class AminoAcidCompound
extends AbstractCompound

Used to describe an Amino Acid.

Author:

Richard Holland, Scooter Willis, Andy Yates

Constructor Summary

Constructors

Constructor and Description
AminoAcidCompound(AminoAcidCompoundSet compoundSet, String shortName, String longName, String description, Float molecularWeight)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
boolean	equalsIgnoreCase(Compound compound)
CompoundSet<AminoAcidCompound>	getCompoundSet()
int	hashCode()

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound

getBase, getDescription, getLongName, getMolecularWeight, getShortName, getUpperedBase, setDescription, setLongName, setMolecularWeight, setShortName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AminoAcidCompound

public AminoAcidCompound(AminoAcidCompoundSet compoundSet,
                 String shortName,
                 String longName,
                 String description,
                 Float molecularWeight)

Method Detail

equals

public boolean equals(Object obj)

Overrides:

equals in class AbstractCompound

hashCode

public int hashCode()

Overrides:

hashCode in class AbstractCompound

equalsIgnoreCase

public boolean equalsIgnoreCase(Compound compound)

Specified by:

equalsIgnoreCase in interface Compound

Overrides:

equalsIgnoreCase in class AbstractCompound

getCompoundSet

public CompoundSet<AminoAcidCompound> getCompoundSet()