org.biojava.nbio.core.sequence.compound

Class CodonCompound

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompound

org.biojava.nbio.core.sequence.compound.CodonCompound

All Implemented Interfaces:

Compound

public class CodonCompound
extends AbstractCompound

Define a codon

Author:

Andy Yates

Constructor Summary

Constructors

Constructor and Description
CodonCompound(NucleotideCompound one, NucleotideCompound two, NucleotideCompound three, boolean start)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
boolean	equalsIgnoreCase(Compound compound)
String	getDescription()
String	getLongName()
Float	getMolecularWeight()
NucleotideCompound	getOne()
String	getShortName()
NucleotideCompound	getThree()
NucleotideCompound	getTwo()
int	hashCode()
boolean	isStart()
void	setDescription(String description)
void	setLongName(String longName)
void	setMolecularWeight(Float molecularWeight)
void	setShortName(String shortName)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound

getBase, getUpperedBase, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

CodonCompound

public CodonCompound(NucleotideCompound one,
             NucleotideCompound two,
             NucleotideCompound three,
             boolean start)

Method Detail

equalsIgnoreCase

public boolean equalsIgnoreCase(Compound compound)

Specified by:

equalsIgnoreCase in interface Compound

Overrides:

equalsIgnoreCase in class AbstractCompound

equals

public boolean equals(Object obj)

Overrides:

equals in class AbstractCompound

hashCode

public int hashCode()

Overrides:

hashCode in class AbstractCompound

getOne

public NucleotideCompound getOne()

getTwo

public NucleotideCompound getTwo()

getThree

public NucleotideCompound getThree()

isStart

public boolean isStart()

getDescription

public String getDescription()

Specified by:

getDescription in interface Compound

Overrides:

getDescription in class AbstractCompound

getLongName

public String getLongName()

Specified by:

getLongName in interface Compound

Overrides:

getLongName in class AbstractCompound

getMolecularWeight

public Float getMolecularWeight()

Specified by:

getMolecularWeight in interface Compound

Overrides:

getMolecularWeight in class AbstractCompound

getShortName

public String getShortName()

Specified by:

getShortName in interface Compound

Overrides:

getShortName in class AbstractCompound

setDescription

public void setDescription(String description)

Specified by:

setDescription in interface Compound

Overrides:

setDescription in class AbstractCompound

setLongName

public void setLongName(String longName)

Specified by:

setLongName in interface Compound

Overrides:

setLongName in class AbstractCompound

setMolecularWeight

public void setMolecularWeight(Float molecularWeight)

Specified by:

setMolecularWeight in interface Compound

Overrides:

setMolecularWeight in class AbstractCompound

setShortName

public void setShortName(String shortName)

Specified by:

setShortName in interface Compound

Overrides:

setShortName in class AbstractCompound