Uses of Package
org.biojava.nbio.core.sequence.features

Packages that use org.biojava.nbio.core.sequence.features

Package	Description
org.biojava.nbio.core.sequence.features
org.biojava.nbio.core.sequence.io
org.biojava.nbio.core.sequence.loader
org.biojava.nbio.core.sequence.template

Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.features

Class and Description
AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that feature
DBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.
FeatureInterface Interface class to handle describing arbitrary features.
Qualifier

Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.io

Class and Description
AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that feature
DBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.
FeatureInterface Interface class to handle describing arbitrary features.

Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.loader

Class and Description
AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that feature
DatabaseReferenceInterface If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s)
DBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.
FeatureRetriever If a SequenceProxyReader implements this interface then that external source has a list features
FeaturesKeyWordInterface Models the keywords that are annotated for a protein sequence at Uniprot.

Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.template

Class and Description
DatabaseReferenceInterface If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s)
FeatureInterface Interface class to handle describing arbitrary features.
FeatureRetriever If a SequenceProxyReader implements this interface then that external source has a list features
FeaturesKeyWordInterface Models the keywords that are annotated for a protein sequence at Uniprot.