org.biojava.nbio.core.sequence.template

Interface SequenceView<C extends Compound>

All Superinterfaces:

Accessioned, Iterable<C>, Sequence<C>

All Known Implementing Classes:

ComplementSequenceView, ReversedSequenceView, RnaSequenceView, SequenceProxyView

public interface SequenceView<C extends Compound>
extends Sequence<C>

Method Summary

Methods

Modifier and Type	Method and Description
Integer	getBioEnd() 1-indexed, inclusive.
Integer	getBioStart() 1-indexed, inclusive.
Sequence<C>	getViewedSequence()

Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

iterator

Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned

getAccession

Method Detail

getViewedSequence

Sequence<C> getViewedSequence()

getBioStart

Integer getBioStart()

1-indexed, inclusive.

getBioEnd

Integer getBioEnd()

1-indexed, inclusive.