Hit (biojava-core 6.0.0 API)

java.lang.Object
- org.biojava.nbio.core.search.io.Hit

All Implemented Interfaces:

Iterable<Hsp>
```
public abstract class Hit
extends Object
implements Iterable<Hsp>
```
This class models a search Hit. You will retrieve a list of this using iterator of a Result Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors
Constructor Description

Hit(int hitNum, String hitId, String hitDef, String hitAccession, int hitLen, List<Hsp> hsps, Sequence hitSequence)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object obj)`	Implements conceptual comparisons of search results.
`String`	`getHitAccession()`
`String`	`getHitDef()`
`String`	`getHitId()`
`int`	`getHitLen()`
`int`	`getHitNum()`
`Sequence`	`getHitSequence()`	returns the reference to the original and whole sequence hit in the database.
`int`	`hashCode()`
`Iterator<Hsp>`	`iterator()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

- Constructor Detail
  - Hit
```
public Hit(int hitNum,
           String hitId,
           String hitDef,
           String hitAccession,
           int hitLen,
           List<Hsp> hsps,
           Sequence hitSequence)
```
- Method Detail
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - equals
```
public boolean equals(Object obj)
```
    Implements conceptual comparisons of search results. Fields unrelated to search are deliberately not considered.
    
    Overrides:
    
    equals in class Object
    
    Returns:
  - getHitNum
```
public int getHitNum()
```
  - getHitId
```
public String getHitId()
```
  - getHitDef
```
public String getHitDef()
```
  - getHitAccession
```
public String getHitAccession()
```
  - getHitLen
```
public int getHitLen()
```
  - getHitSequence
```
public Sequence getHitSequence()
```
    returns the reference to the original and whole sequence hit in the database. Available only if the ResultFactory implements setHitReferences and it was used before the parsing with SearchIO
    
    Returns:
    
    Sequence object
  - iterator
```
public Iterator<Hsp> iterator()
```
    Specified by:
    
    iterator in interface Iterable<Hsp>