Uses of Package
org.biojava.nbio.core.sequence.features
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Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.features Class Description AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that featureDBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.FeatureInterface Interface class to handle describing arbitrary features.Qualifier -
Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.io Class Description AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that featureDBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.FeatureInterface Interface class to handle describing arbitrary features. -
Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.loader Class Description AbstractFeature A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that featureDatabaseReferenceInterface If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s)DBReferenceInfo If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.FeatureRetriever If a SequenceProxyReader implements this interface then that external source has a list featuresFeaturesKeyWordInterface Models the keywords that are annotated for a protein sequence at Uniprot. -
Classes in org.biojava.nbio.core.sequence.features used by org.biojava.nbio.core.sequence.template Class Description DatabaseReferenceInterface If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s)FeatureInterface Interface class to handle describing arbitrary features.FeatureRetriever If a SequenceProxyReader implements this interface then that external source has a list featuresFeaturesKeyWordInterface Models the keywords that are annotated for a protein sequence at Uniprot.