Package org.biojava.nbio.core.sequence.io.embl

Class EmblId

java.lang.Object

org.biojava.nbio.core.sequence.io.embl.EmblId

public class EmblId
extends Object

This class contains the processed data of embl file Primary accession number Sequence version number Topology: 'circular' or 'linear' Molecule type Data class Taxonomic division Sequence length

Since:

5.0.0

Author:

Noor Aldeen Al Mbaidin

Constructor Summary

Constructors

Constructor	Description
EmblId(String primaryAccession, String sequenceVersion, String topology, String moleculeType, String dataClass, String taxonomicDivision, String sequenceLength)

Method Summary

Modifier and Type	Method	Description
String	getDataClass()
String	getMoleculeType()	Molecule type this represents the type of molecule as stored
String	getPrimaryAccession()
String	getSequenceLength()	Sequence length The last item on the ID line is the length of the sequence (the total number of bases in the sequence).
String	getSequenceVersion()	return the sequence version
String	getTaxonomicDivision()
String	getTopology()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EmblId

public EmblId(String primaryAccession,
              String sequenceVersion,
              String topology,
              String moleculeType,
              String dataClass,
              String taxonomicDivision,
              String sequenceLength)

Method Detail

getPrimaryAccession

public String getPrimaryAccession()

Returns:

String

getSequenceVersion

public String getSequenceVersion()

return the sequence version

Returns:

String

getTopology

public String getTopology()

getMoleculeType

public String getMoleculeType()

Molecule type this represents the type of molecule as stored

Returns:

String

getDataClass

public String getDataClass()

getTaxonomicDivision

public String getTaxonomicDivision()

Returns:

String

getSequenceLength

public String getSequenceLength()

Sequence length The last item on the ID line is the length of the sequence (the total number of bases in the sequence). This number includes base positions reported as present but undetermined (coded as "N").

Returns:

String