Uses of Class
org.biojava.nbio.core.sequence.location.template.AbstractLocation

Packages that use AbstractLocation

Package	Description
org.biojava.nbio.core.sequence.features
org.biojava.nbio.core.sequence.location

Uses of AbstractLocation in org.biojava.nbio.core.sequence.features

Methods in org.biojava.nbio.core.sequence.features that return AbstractLocation

Modifier and Type	Method	Description
AbstractLocation	AbstractFeature.getLocations()	A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.
AbstractLocation	FeatureDbReferenceInfo.getLocations()
AbstractLocation	FeatureInterface.getLocations()	The location(s) of this feature where the location should contain a reference to parent and sequence etc.

Methods in org.biojava.nbio.core.sequence.features with parameters of type AbstractLocation

Modifier and Type	Method	Description
void	AbstractFeature.setLocation(AbstractLocation loc)	A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.
void	FeatureDbReferenceInfo.setLocation(AbstractLocation loc)
void	FeatureInterface.setLocation(AbstractLocation loc)	The new location for this feature.

Uses of AbstractLocation in org.biojava.nbio.core.sequence.location

Subclasses of AbstractLocation in org.biojava.nbio.core.sequence.location

Modifier and Type	Class	Description
static class	InsdcLocations.BondLocation	Used to represent bond locations equivalent to bond(7,8) or bond(7).
static class	InsdcLocations.GroupLocation	Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined.
static class	InsdcLocations.OneOfLocation	Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g.
static class	InsdcLocations.OrderLocation	Used to describe a 5' to 3' ordering but no firm assurance it is correct
class	SequenceLocation<S extends AbstractSequence<C>,C extends Compound>	A location in a sequence that keeps a reference to its parent sequence
class	SimpleLocation	Very basic implementation of the Location interface which defines a series of simple constructors.