Uses of Interface org.biojava.nbio.core.sequence.io.template.SequenceHeaderParserInterface (biojava-core 6.0.3 API)

Packages that use SequenceHeaderParserInterface
Package Description

org.biojava.nbio.core.sequence.io

Uses of SequenceHeaderParserInterface in org.biojava.nbio.core.sequence.io

Classes in org.biojava.nbio.core.sequence.io that implement SequenceHeaderParserInterface
Modifier and Type	Class	Description
`class`	`GenericFastaHeaderParser<S extends AbstractSequence<C>,C extends Compound>`	The default fasta header parser where some headers are well defined based on the source database which allows us to set the source of the protein sequence and the identifier that can be used in future implementations to load features from external sources If the user has a custom header with local data then they can create their own implementation of a FastaHeaderParserInterface
`class`	`GenericGenbankHeaderParser<S extends AbstractSequence<C>,C extends Compound>`
`class`	`PlainFastaHeaderParser<S extends AbstractSequence<C>,C extends Compound>`	The plain fasta header takes everything in the header as a single entity.

Constructors in org.biojava.nbio.core.sequence.io with parameters of type SequenceHeaderParserInterface
Constructor	Description
`FastaReader(File file, SequenceHeaderParserInterface<S,C> headerParser, SequenceCreatorInterface<C> sequenceCreator)`	If you are going to use the FileProxyProteinSequenceCreator then you need to use this constructor because we need details about the location of the file.
`FastaReader(InputStream is, SequenceHeaderParserInterface<S,C> headerParser, SequenceCreatorInterface<C> sequenceCreator)`	If you are going to use FileProxyProteinSequenceCreator then do not use this constructor because we need details about local file offsets for quick reads.
`GenbankReader(File file, SequenceHeaderParserInterface<S,C> headerParser, SequenceCreatorInterface<C> sequenceCreator)`	If you are going to use the FileProxyProteinSequenceCreator then you need to use this constructor because we need details about the location of the file.
`GenbankReader(InputStream is, SequenceHeaderParserInterface<S,C> headerParser, SequenceCreatorInterface<C> sequenceCreator)`	If you are going to use `FileProxyProteinSequenceCreator` then do not use this constructor because we need details about local file offsets for quick reads.