org.biojava.nbio.structure.align.gui

Class MenuCreator

java.lang.Object

org.biojava.nbio.structure.align.gui.MenuCreator

public class MenuCreator
extends Object

Create the menu for Fatcat/CE structure alignment stuff

Since:

1.7

Author:

Andreas Prlic

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALIGNMENT_PANEL
static String	EQR_COLOR
static String	FATCAT_BLOCK
static String	FATCAT_TEXT
static String	LOAD_ALIGNMENT_XML
static String	LOAD_DB_RESULTS
static String	PAIRS_ONLY
static String	PRINT
static String	SAVE_ALIGNMENT_XML
static String	SELECT_EQR
static String	SIMILARITY_COLOR
static String	TEXT_ONLY

Constructor Summary

Constructors

Constructor and Description
MenuCreator()

Method Summary

Methods

Modifier and Type	Method and Description
static ImageIcon	createImageIcon(String path) Returns an ImageIcon, or null if the path was invalid.
static JMenuItem	getAboutMenuItem()
static JMenuBar	getAlignmentTextMenu(JFrame frame, ActionListener actionListener, AFPChain afpChain) Create the menu for the "Text Only" representation of alignments
static JMenuItem	getCloseMenuItem(JFrame frame)
static JMenuItem	getDBResultMenuItem()
static JMenuItem	getExitMenuItem()
static JMenuItem	getExportPDBMenuItem(StructureAlignmentJmol parent)
static JMenuItem	getHelpMenuItem()
static JMenuItem	getLoadMenuItem()
static JMenuItem	getOpenPDBMenuItem()
static JMenuItem	getPrintMenuItem()
static JMenuItem	getSaveAlignmentMenuItem(AFPChain afpChain)
static JMenuItem	getShowPDBMenuItem()
static JMenuBar	initAlignmentGUIMenu(JFrame frame)
static JMenuBar	initMenu(JFrame frame, StructureAlignmentJmol parent, AFPChain afpChain) provide a JMenuBar that can be added to a JFrame
static void	showAboutDialog() show some info about this gui
protected static void	showMemoryMonitor()
static void	showSystemInfo()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PRINT

public static final String PRINT

See Also:

Constant Field Values

ALIGNMENT_PANEL

public static final String ALIGNMENT_PANEL

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Constant Field Values

TEXT_ONLY

public static final String TEXT_ONLY

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Constant Field Values

PAIRS_ONLY

public static final String PAIRS_ONLY

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Constant Field Values

SELECT_EQR

public static final String SELECT_EQR

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Constant Field Values

SIMILARITY_COLOR

public static final String SIMILARITY_COLOR

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Constant Field Values

EQR_COLOR

public static final String EQR_COLOR

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Constant Field Values

FATCAT_BLOCK

public static final String FATCAT_BLOCK

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Constant Field Values

LOAD_DB_RESULTS

public static final String LOAD_DB_RESULTS

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Constant Field Values

SAVE_ALIGNMENT_XML

public static final String SAVE_ALIGNMENT_XML

See Also:

Constant Field Values

LOAD_ALIGNMENT_XML

public static final String LOAD_ALIGNMENT_XML

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Constant Field Values

FATCAT_TEXT

public static final String FATCAT_TEXT

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Constant Field Values

Constructor Detail

MenuCreator

public MenuCreator()

Method Detail

initMenu

public static JMenuBar initMenu(JFrame frame,
                StructureAlignmentJmol parent,
                AFPChain afpChain)

provide a JMenuBar that can be added to a JFrame

Returns:

a JMenuBar

getDBResultMenuItem

public static JMenuItem getDBResultMenuItem()

getShowPDBMenuItem

public static JMenuItem getShowPDBMenuItem()

getOpenPDBMenuItem

public static JMenuItem getOpenPDBMenuItem()

getLoadMenuItem

public static JMenuItem getLoadMenuItem()

getAlignmentTextMenu

public static JMenuBar getAlignmentTextMenu(JFrame frame,
                            ActionListener actionListener,
                            AFPChain afpChain)

Create the menu for the "Text Only" representation of alignments

Parameters:

frame -

actionListener -

afpChain -

Returns:

a JMenuBar

getPrintMenuItem

public static JMenuItem getPrintMenuItem()

getExportPDBMenuItem

public static JMenuItem getExportPDBMenuItem(StructureAlignmentJmol parent)

getSaveAlignmentMenuItem

public static JMenuItem getSaveAlignmentMenuItem(AFPChain afpChain)

getAboutMenuItem

public static JMenuItem getAboutMenuItem()

getExitMenuItem

public static JMenuItem getExitMenuItem()

getHelpMenuItem

public static JMenuItem getHelpMenuItem()

getCloseMenuItem

public static JMenuItem getCloseMenuItem(JFrame frame)

showAboutDialog

public static void showAboutDialog()

show some info about this gui

showSystemInfo

public static void showSystemInfo()

createImageIcon

public static ImageIcon createImageIcon(String path)

Returns an ImageIcon, or null if the path was invalid.

Parameters:

path - the path to the icon

Returns:

ImageIcon object

initAlignmentGUIMenu

public static JMenuBar initAlignmentGUIMenu(JFrame frame)

showMemoryMonitor

protected static void showMemoryMonitor()