Uses of Class
org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol

Packages that use StructureAlignmentJmol

Package	Description
org.biojava.nbio.structure.align.gui
org.biojava.nbio.structure.align.gui.aligpanel

Uses of StructureAlignmentJmol in org.biojava.nbio.structure.align.gui

Methods in org.biojava.nbio.structure.align.gui that return StructureAlignmentJmol

Modifier and Type	Method and Description
static StructureAlignmentJmol	StructureAlignmentDisplay.display(AFPChain afpChain, Atom[] ca1, Atom[] ca2) Display the alignment
static StructureAlignmentJmol	DisplayAFP.display(AFPChain afpChain, Group[] twistedGroups, Atom[] ca1, Atom[] ca2, List<Group> hetatms, List<Group> nucleotides, List<Group> hetatms2, List<Group> nucleotides2) Note: ca2, hetatoms2 and nucleotides2 should not be rotated.

Methods in org.biojava.nbio.structure.align.gui with parameters of type StructureAlignmentJmol

Modifier and Type	Method and Description
static JMenuItem	MenuCreator.getExportPDBMenuItem(StructureAlignmentJmol parent)
static JMenuBar	MenuCreator.initMenu(JFrame frame, StructureAlignmentJmol parent, AFPChain afpChain) provide a JMenuBar that can be added to a JFrame
static void	DisplayAFP.showAlignmentImage(AFPChain afpChain, Atom[] ca1, Atom[] ca2, StructureAlignmentJmol jmol)

Constructors in org.biojava.nbio.structure.align.gui with parameters of type StructureAlignmentJmol

Constructor and Description
MyAlignmentLoadListener(StructureAlignmentJmol jmol)

Uses of StructureAlignmentJmol in org.biojava.nbio.structure.align.gui.aligpanel

Methods in org.biojava.nbio.structure.align.gui.aligpanel with parameters of type StructureAlignmentJmol

Modifier and Type	Method and Description
void	AligPanel.setStructureAlignmentJmol(StructureAlignmentJmol jmol)