| Interface | Description |
|---|---|
| AlignmentCalculationRunnable |
| Class | Description |
|---|---|
| AboutDialog | |
| AlignmentCalc |
A class that obtains two structures via DAS and aligns them
This is done in a separate thread.
|
| AlignmentCalcDB | |
| AlignmentGui |
A JFrame that allows to trigger a pairwise structure alignment,
either from files in a directory,
or after manual upload.
|
| AlignmentTextPanel | |
| ChooseDirAction |
Ask the user to provide a directory containting PDB files.
|
| ConfigPDBInstallPanel | |
| DBResultTable | |
| DBSearchGUI | |
| DisplayAFP |
A utility class for visualistion of structure alignments
|
| DotPlotPanel |
Displays the dot plot trace for an alignment.
|
| GUIAlignmentProgressListener |
a GUI that allows to watch progress as multiple alignments are being processed.
|
| GUIFarmJobRunnable | |
| HelpDialog | |
| JPrintPanel | |
| MemoryMonitor |
Tracks Memory allocated & used, displayed in graph form.
|
| MenuCreator |
Create the menu for Fatcat/CE structure alignment stuff
|
| MyAlignmentLoadListener | |
| MyDistMaxListener | |
| MyExportListener | |
| MyOpenPdbFileListener | |
| MySaveFileListener | |
| MyTableRowSorter | |
| ParameterGUI |
UI for
ConfigStrucAligParams, for the AlignmentGUI. |
| SelectPDBPanel |
A Panel that allows user to specify PDB & chain ID, as well as sub-ranges
|
| ShowPDBIDListener | |
| StructureAlignmentDisplay | |
| StructureLoaderThread | |
| SystemInfo |
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