org.biojava.nbio.structure.symmetry.jmolScript

Class JmolSymmetryScriptGeneratorC1

java.lang.Object

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorC1

public class JmolSymmetryScriptGeneratorC1
extends JmolSymmetryScriptGeneratorPointGroup

Author:

Peter

Constructor Summary

Constructors

Constructor and Description
JmolSymmetryScriptGeneratorC1(RotationAxisAligner axisTransformation, String name)

Method Summary

Methods

Modifier and Type	Method and Description
int	getOrientationCount() Returns the number of orientations available for this structure
int	getZoom() Returns the Jmol zoom to fit polyhedron and symmetry axes.

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

colorBySequenceCluster, colorBySubunit, colorBySymmetry, drawAxes, drawPolyhedron, getAxisTransformation, getDefaultOrientation, getMaxExtension, getMeanExtension, getOrientation, getOrientationName, getOrientationWithZoom, getPolyhedron, getRotationGroup, getTransformation, hideAxes, hidePolyhedron, playOrientations, setAxisTransformation, setDefaultColoring, setOnTheFly, setPolyhedron, setRotationGroup, showAxes, showPolyhedron

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

f1Dot2, fDot2, getInstance, getJmolColor, getJmolColorScript, getJmolLigandScript, getJmolPoint, jMolFloat

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JmolSymmetryScriptGeneratorC1

public JmolSymmetryScriptGeneratorC1(RotationAxisAligner axisTransformation,
                             String name)

Method Detail

getZoom

public int getZoom()

Description copied from class: JmolSymmetryScriptGenerator

Returns the Jmol zoom to fit polyhedron and symmetry axes. This zoom level should be used so that the polyhedron and symmetry axes are not cutoff.

Specified by:

getZoom in class JmolSymmetryScriptGeneratorPointGroup

Returns:

getOrientationCount

public int getOrientationCount()

Description copied from class: JmolSymmetryScriptGenerator

Returns the number of orientations available for this structure

Overrides:

getOrientationCount in class JmolSymmetryScriptGeneratorPointGroup

Returns:

number of orientations