org.biojava.nbio.structure.align.gui

Class AlignmentCalcDB

java.lang.Object

org.biojava.nbio.structure.align.gui.AlignmentCalcDB

All Implemented Interfaces:

java.lang.Runnable, AlignmentCalculationRunnable

public class AlignmentCalcDB
extends java.lang.Object
implements AlignmentCalculationRunnable

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	SCOP_VERSION

Constructor Summary

Constructors

Constructor and Description
AlignmentCalcDB(AlignmentGui parent, Structure s1, java.lang.String name1, UserConfiguration config, java.lang.String outFile, java.lang.Boolean domainSplit)

Method Summary

Modifier and Type	Method and Description
void	cleanup()
StructureAlignment	getAlgorithm()
void	interrupt() stops what is currently happening and does not continue
boolean	isInterrupted()
void	run()
void	setAlgorithm(StructureAlignment algo)
void	setNrCPUs(int useNrCPUs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SCOP_VERSION

public static java.lang.String SCOP_VERSION

Constructor Detail

AlignmentCalcDB

public AlignmentCalcDB(AlignmentGui parent,
                       Structure s1,
                       java.lang.String name1,
                       UserConfiguration config,
                       java.lang.String outFile,
                       java.lang.Boolean domainSplit)

Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()

setAlgorithm

public void setAlgorithm(StructureAlignment algo)

run

public void run()

Specified by:

run in interface java.lang.Runnable

interrupt

public void interrupt()

stops what is currently happening and does not continue

Specified by:

interrupt in interface AlignmentCalculationRunnable

cleanup

public void cleanup()

Specified by:

cleanup in interface AlignmentCalculationRunnable

setNrCPUs

public void setNrCPUs(int useNrCPUs)

Specified by:

setNrCPUs in interface AlignmentCalculationRunnable

isInterrupted

public boolean isInterrupted()