Uses of Class
org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol

Packages that use StructureAlignmentJmol

Package	Description
org.biojava.nbio.structure.align.gui

Uses of StructureAlignmentJmol in org.biojava.nbio.structure.align.gui

Methods in org.biojava.nbio.structure.align.gui that return StructureAlignmentJmol

Modifier and Type	Method and Description
static StructureAlignmentJmol	StructureAlignmentDisplay.display(AFPChain afpChain, Atom[] ca1, Atom[] ca2) Display an AFPChain alignment
static StructureAlignmentJmol	DisplayAFP.display(AFPChain afpChain, Group[] twistedGroups, Atom[] ca1, Atom[] ca2, java.util.List<Group> hetatms1, java.util.List<Group> hetatms2) Note: ca2, hetatoms2 and nucleotides2 should not be rotated.